Momordica charantia (bitter melon): 111010855
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Entry
111010855 CDS
T05045
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111010855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111010855
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111010855
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111010855
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111010855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111010855
NCBI-ProteinID:
XP_022140120
UniProt:
A0A6J1CE78
LinkDB
All DBs
Position
Unknown
AA seq
707 aa
AA seq
DB search
MEDPEGVLSFDFEGGLDAGPTNPAATSLPLIQSDPSAPPAASAVSSSGPGAVGHAVTVEA
GGAVTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYNYGPSN
KFFSQRGAGLSHQIEKPQFPQGPATVNQGVVGKPSTAESANVQQPQAQQSAQQTSQTQIQ
SLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK
AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHM
PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFM
GPPSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQLYP
PPAVPPSQNMNRVVKRDQRGPGNDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKAYP
DEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATVVSDQ
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccggagggagttctcagctttgatttcgagggcggcctcgatgccggcccc
accaaccccgccgccacctccttgcctctcatccagtccgacccttcggccccgcccgcc
gcctccgccgtctccagctctgggcccggcgccgtgggtcatgccgtcacagttgaagcg
ggtggcgctgtgaccggcaacgtcgggagccggaggagcttccggcaaactgtttgccgg
cattggctccgcagcctatgtatgaagggcgacgcctgcggcttccttcaccagtatgat
aagtcgcggatgcccatttgccggttctttcgtctctatggcgagtgccgcgaacaggat
tgcgtgtacaaacataccaacgaagatatcaaggagtgtaatatgtacaagtttggtttc
tgtccaaatggtccagattgtcggtataggcatgcaaaacttcctggacctccacctcca
gtggaagaaatccttcagaaaatacagcacttgagttcatataattatggtccctcaaac
aaattcttttcacaacggggagctggattatcccatcaaatcgaaaaacctcaatttcct
caggggccagccacagttaatcaaggagtggtgggaaaaccctctacagcagaatctgct
aatgtccaacaaccgcaagctcaacagtctgctcaacaaaccagccagactcagatacaa
agtctttctaatggccagcccaatcaattaaacagaactgcgacgtctttgcctcaagga
atatctaggtactttattgttaaaagttgcaaccgcgagaatttggaattatctgtacaa
caaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgattct
gctgataatgttattttgattttctcagtcaatcggactcgacattttcagggttgtgca
aagatgatgtccaggattggtggatctgtcagtgggggcaattggaaatatgcacatgga
actgcacattacgggcaaaacttttcactcaaatggctgaagttatgtgaattatccttc
cagaaaactcgccatttgaggaatccatataatgagaacttaccagtaaagatcagtaga
gattgccaagagctagagccctcaattggtgaacagctggcttctttgctttatcttgag
ccagatggtgaactcatggcagtctcgctagcagcagagtcgaaacgagaagaggagaag
gcaaagggagttaatcctgatattggaagtgagaacccagacatcgtcccattcgaggac
aatgaagaagaggaagaagaagaaagtgaagaggaggaggaggagagctttggccagtcc
gttggtcttccagctcagggaaggggaaggggcaggggaatcatgtggcccccacacatg
ccaatgggacgtggtgccagacccttccatggaatgcagggttttccacctgggatgatg
ggtccagatgggttgtcttatggacctgttacacctgatggatttcccatgccagacatt
tttggcatggctccccgtggttttggtccatatggtcctcgattctctggtgattttatg
ggtcctccatctgctatgatgtttcgcggacgtccttctcaacctggggccatgttcccc
cctggtggttttggcatgatgatgggtcaaggacgcggtcccttcatgggcgggatgggg
gttactggtgctaacccagctcgacctggccggcctgtgagcgtgtctcaattgtatcca
cctccagcagtacccccatctcagaacatgaatcgggttgtgaagcgggatcagaggggg
ccgggtaatgatcgaaatgatagatatattgcgggtccagaccaaagcaagggccaggag
atgccaggaagtggacatgatgatgagatgcaatataaacagggatcaaaagcttatcct
gatgagcaatatggcataggaaccacgtttaggaatgaagagagtgaaagcgaggacgag
gcgcctcgaaggtcaaggcacggagaggggaagaagaagcggagaggctctgaaggagat
gcaactgtagtctctgatcagtga
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integrated database retrieval system
