Momordica charantia (bitter melon): 111013015
Help
Entry
111013015 CDS
T05045
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111013015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcha03041
]
111013015
Enzymes [BR:
mcha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111013015
Spliceosome [BR:
mcha03041
]
Complex C
Other components
Step II factors
111013015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
ABC_tran
AAA_16
TsaE
Sigma54_activ_2
PhoH
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
111013015
NCBI-ProteinID:
XP_022143025
UniProt:
A0A6J1CMK5
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MVASANGDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRSCETVDDFDAKLK
ENGAEMPDYFVRSLLRIIHLILPPQKANEKELKKEKDSDGKKGKFRALAIDDDRERVKEL
EKEIELEVHQHRGDRDEEDDRYKARAGDRGRDRDRDRDRGRDRDRVRDRDGDRDRDRYRD
RDRDRDRCRDRYERDERHDNREDGGDDYRRSGRQRDRRRNGHEGNENYRADAEDGNGNWR
GDRDKHTQNGQHRPVDQEPELYKVYKGRVSRVMDTGCFVQINDFRGKEGLVHVSQIATRR
ISNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKKDTDDGPRMNPSDS
RDDGPVVRTGLSGIKIVEDNITVPSRRPLKRMSSPERWEAKQLIASGVLSVSDYPSYDDE
GDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSIDMSPVKIFKNPEGSLSRAAALQSAL
IKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA
YGKDISFGQKSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLA
EAGYTTSGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTD
GMLLREILIDDNLSQYSVVMLDEAHERTIFTDVLFGLLKQLVKRRPDLRLIVTSATLDAE
KFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDILLFLTGQ
EEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAE
ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLY
TESAYRNEMSPTTIPEIQRINLGHTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYS
LGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPRE
KQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLL
SIMDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQ
RQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYD
RYHEPNSWRLSKRRA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggttgcttcggctaacggtgatgatggattgaagaagctggagtatttatctctcgtc
tccaaggtatgctcagagctcgaaactcatttagggttcggagataaagtcctcgccgag
ttcataaccgagatgggccggagttgtgagacggtggatgatttcgatgccaaattgaaa
gagaacggcgccgaaatgcccgattactttgttcgctcgctcctgaggatcattcacctt
attcttcctccgcagaaggccaatgagaaggagttgaagaaagagaaggattcagatggg
aagaagggcaagtttcgggcgttggcgatcgatgatgatagggagagagtgaaggagctg
gagaaggaaatcgagttggaagtccaccagcatcgaggggacagagatgaagaagatgat
cgatacaaggcgagggcaggggacagaggtagagacagagacagagatagagatcgaggt
agggatagggatagggttagggatagagatggagatagagatagagataggtaccgcgat
cgggacagggatagagataggtgcagggatagatatgaaagggacgagaggcatgacaat
agggaagacggtggggatgattaccggagaagtggaaggcaaagggatcgtaggagaaat
ggacatgaaggcaatgagaattacagggctgatgcagaagatggtaatggcaattggaga
ggtgatagggacaagcatacacaaaatggccaacaccggcctgtcgaccaagagcctgaa
ttgtacaaggtctacaagggtagagtttccagagtgatggacacgggttgctttgtacaa
ataaatgatttcagaggcaaggagggtctggttcacgtttctcagattgctactcgaagg
attagcaatgccaaagacgttgtaaagcgggatcaagaggtttatgtcaaggtcatttcg
gtttcagggcaaaagttgagcctctctatgagggacgttgatcagcattctggtaaggat
ttgcttccgttgaagaaaaaagatacagatgatggtcctagaatgaatccttcagattca
agggatgatggcccggtggttaggactggcctttctggaattaaaattgtggaagacaac
atcactgtcccttcacgcagacctttgaagagaatgagctcaccagagagatgggaagcc
aaacaactgattgcatctggggttctaagtgtaagtgattatccctcttatgacgacgag
ggagatgggttattatatcaagaagagggtgctgaagaggagcttgagattgagttgaat
gaagacgagcctgcatttctacaagggcagagcagatactcaattgacatgtcgccagtt
aagatatttaaaaatccagaagggtcactgagtcgggcagccgcacttcaatctgcactc
atcaaggagcgtagagaagttcgtgagcagcaacagaggaccatgcttgattcgattcca
aaggatcttaatcgaccttgggaagaccctatgccagagactggtgagagacatcttgca
caggagcttaggggcgttggcttgtcagcctatgatatgcctgagtggaagaaggacgct
tatggaaaagatataagttttgggcagaagtcaaagctctctatccaggaacagaggcag
agtttacccatttacaagctgaagaaagaacttatccaggccgttcatgataatcaggta
cttgttgtcattggtgagactggttcaggtaagacgactcaggtaactcagtatcttgct
gaagctgggtacacaacatccggtaaaattggatgtactcaacctcgtagggtggctgca
atgtctgtcgcgaagagggtcgctgaagagttcggatgccgcttaggagaggaagttgga
tatgcaattcgttttgaggattgtactggacctgatactgtgatcaagtatatgactgat
ggtatgcttcttagggagatattgattgatgacaacttgtctcagtactcagtagttatg
cttgatgaagctcacgagagaacaatcttcactgatgttctttttgggttgctgaagcaa
cttgtgaagaggagacctgatcttcgtttgattgtcacatctgctactttagatgccgaa
aaattttcaggatatttctttaactgtaatatctttacaattcctgggagaactttcccc
gtggagatcctctacactaagcagccggagactgattatcttgatgctgctctaataact
gttttgcagatccacttgacagaacctgaaggtgacatacttcttttcttgactggtcag
gaggagattgattttgcatgtcagtctttatacgagagaatgaaaggacttggtaaaaac
gttcccgagttaattattctaccagtctacagtgccttacccagtgaaatgcaatcaagg
atttttgaacctgctcctcctggtaagaggaaggtggtagtggctactaacattgctgag
gcttcattgacaatagatggaatcttctatgttattgatccggggtttgctaaacagaat
gtatataacccaaagcaagggcttgattctcttgttattacacctatctcacaagcatca
gccaaacaacgtgcggggcgtgctggacgaacaggacctggaaaatgttaccgcctctat
acggagagtgcttatcgcaatgagatgtctcctacaacaataccagaaatccagaggata
aatcttggtcatactacacttaccatgaaagcaatgggaataaatgatcttctgtcgttt
gattttatggatccaccttctccccaagctctaatatcggcaatggaacaactttacagt
ctgggagcacttgatgaagaaggacttctgactaaattgggtagaaaaatggcagaattt
cctttagatccacctttgtctaagatgctgctagccagtgtggatcttggatgcagcgat
gagattttgaccataattgcaatgattcagactggaaatatattttacaggccaagggaa
aaacaagcccaagctgatcagaaaagggccaagtttttccagccagagggagatcatctg
actttgcttgctgtttatgaggcgtggaaagccaaaaacttttcaggcccttggtgtttt
gagaactttgttcaatctcgatccttgaggagagcgcaggatgtgagaaaacagcttctt
tcaattatggacaagtataagttagatgtggtgagtgctggcaagaatttcacccaaata
aggaaggcaatcacagcagggttctttttccatgcagccagaaaggatcctcaagaaggt
tatcggacccttgtcgagaaccaaccggtttatatccatcctagcagtgcattattccaa
agacaacctgactgggtcatataccacgagctggtcatgactacaaaagagtacatgcgt
gaagtgacagttatagatcccaaatggcttgttgaattagctccaaggttctttaaagtt
gcagacccgacaaaaatgagcaagagaaagcggcaagagcggattgaaccgctctacgac
agatatcacgagccaaactcttggcgattgagtaagagacgagcttaa
DBGET
integrated database retrieval system
