Momordica charantia (bitter melon): 111013834
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Entry
111013834 CDS
T05045
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111013834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111013834
Enzymes [BR:
mcha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111013834
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111013834
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
111013834
NCBI-ProteinID:
XP_022144047
UniProt:
A0A6J1CSK6
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MKTPRPLWALPRLLCFIRTATYSSAAVTAPATAVNPSFPLKNVTKSNFEAVVAELRNHVR
AADFVAIDLEMTGITSAPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSTKNS
FIAHPHNFFVFPRQEIQVDGPSPEFLCQTTSVEFLAKYQFDFNACIHEGISYLSRAQEYA
ARKRLDFAYGDEMSDASSNVTDIKDEKRVSISDVLFKERMKNRLHEWRDRLLSERNVEFQ
GQECSYQRPFQTIFFKMRPALCLNDFTSHQTRLIQLVIKKHFTDLCYVHVDNGNANLQQL
VVYVDYRDDKELLMKEVNSERQKAAEMKIQSAIGFRHVIDLLSLEKKLIVGHNCFLDIAH
IHSKFIGSLPSTAEEFVSSIGKHFPYIMDTKILLNGNSILQQRMKKSSTSLSSALGVLCP
HIAFSSHSKSSPAFNSGVQVEVQVDDLRSSNWNSGDKHEAGYDAFMTGCVFAQACNLIGI
DFVRSSPSETLADNEKFQNHVNHLYLSWXSGDIIDLSTGNRRTESLRSNRSKKHQAKISF
ENIVLIWGFPTNINARKIKQCISKVFGPTNVVSVYHLDESAVFVQFAKLEMVSEFLMLKE
NLERHNDPVSVLHPLYELFEARNTHAACYEAYKEICSSPICKLLFADQAEAVGFNRKTKS
IKPETVKSQMHEAANGLTADMLDGNTEIQETEIGANDISCTNYNVLNLSSM
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcctcgccctctttgggctctcccgcggcttctttgcttcatcagaactgca
acctactcctccgccgccgttactgctccggccaccgccgtgaaccctagttttcccctc
aagaatgtcaccaagtccaacttcgaagcagtggttgcggagcttcggaatcatgtccga
gctgcggacttcgttgccattgacctagaaatgaccggaatcaccagcgccccatggcgc
gaatctttcgagttcgatcgctttgatgttcgctacctcaaggtcaaggactccgccgag
aagttcgctgtggttcaattcggcgtctgcccttttcgctgggactccacgaagaactcg
tttatcgctcatccgcataatttttttgttttcccgcgtcaagaaattcaagtcgatggc
ccttctcccgagttcctctgtcagacaacctccgtagaattcttggctaaataccagttt
gatttcaacgcctgtatacatgaaggaatatcttatttgtccagagcacaagaatatgca
gcacgtaaacgcctggattttgcatatggggatgaaatgtcagatgcatcttctaatgtg
actgatatcaaggatgagaaaagggtcagcatttcggatgttttattcaaggaaagaatg
aagaacagattgcatgaatggcgggacagattactatctgaaaggaacgtggagttccag
ggtcaggaatgctcttaccaacgaccatttcaaaccattttcttcaagatgcgtcctgct
ctttgtttgaacgatttcacctctcatcagacaagattgattcagctggtaatcaagaag
cattttacggatctttgttatgttcatgtggataatggcaatgcaaatttacaacaatta
gttgtgtatgtggattacagagacgataaagagttgctcatgaaagaggtaaacagcgaa
cggcagaaagcagctgaaatgaagatccaatctgcaattgggtttcgtcatgttattgat
cttctctcattggaaaagaagctgatcgtcggtcataattgcttccttgatattgctcac
atacacagcaaattcataggttctcttccttcaactgctgaagaatttgtatcttctatt
ggaaaacactttccatacatcatggacaccaaaattctattaaatggcaatagtatactt
cagcaacggatgaagaagtccagcacatctctatcctctgcattgggcgtattatgcccg
catattgcttttagctctcactcaaagagcagtcctgccttcaactcgggtgtgcaagtg
gaggttcaagtagatgatttaagatcctccaactggaactctggagataaacatgaagct
gggtacgatgcttttatgacgggatgcgtatttgctcaagcatgcaatcttattggaatt
gatttcgtacgtagctcaccttctgaaactttggctgacaatgagaaattccagaatcat
gtaaaccatctgtatttgagttggkccagtggagatattatcgatctgagcaccggtaat
agaagaaccgagtctttgaggtctaatagatccaaaaagcatcaagcaaaaatatcgttc
gagaacattgttctaatatggggatttcccaccaacattaatgcaaggaagatcaaacag
tgcatctctaaagtctttggcccgaccaatgtcgttagcgtctaccatttagatgaaagt
gctgtttttgtgcagtttgcgaagctagaaatggtttctgagtttcttatgctgaaggaa
aacttggagaggcataatgatcctgtatcagttttgcatcctctctatgaactttttgaa
gctagaaatactcatgccgcatgctatgaagcatacaaggaaatttgcagctctcccatt
tgtaaactcttgtttgctgaccaggccgaggcagttgggtttaatcggaagacaaagtca
ataaaacccgagacagttaagagccaaatgcacgaagctgccaatggtttaactgctgat
atgttggatggaaacaccgaaatacaggagacagagattggagcaaatgatattagctgc
actaactataatgtcttaaacttgtcttcaatgtaa
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