Momordica charantia (bitter melon): 111013945
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Entry
111013945 CDS
T05045
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03008
Ribosome biogenesis in eukaryotes
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111013945
09123 Folding, sorting and degradation
03018 RNA degradation
111013945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111013945
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111013945
03009 Ribosome biogenesis [BR:
mcha03009
]
111013945
03016 Transfer RNA biogenesis [BR:
mcha03016
]
111013945
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111013945
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111013945
Ribosome biogenesis [BR:
mcha03009
]
Eukaryotic type
Pre-60S particles
RNases
111013945
Transfer RNA biogenesis [BR:
mcha03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111013945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
111013945
NCBI-ProteinID:
XP_022144192
UniProt:
A0A6J1CSZ5
LinkDB
All DBs
Position
Unknown
AA seq
1088 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVVEEEPVVIDGIAIPVDTSKPNPNNLEFDNLYLDMNGIIH
PCFHPEDRPSPTTYAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEARLREEFEREGRKLPPKQESQVFDSNVITPGTDFMAVLSIALQYYIHL
RLNNDPGWKNTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQEKCFLCGQLGHFASDCEGKAKRKAGEFDEKGEDVVVKKP
YQFLHIWTLREYLEHEMRIPNAPFEIDLERIVDDFVFMCFFVGNDFLPHMPTLEIREGAI
NLLLAVYKKEFRALGGYLTDGSKPNLRRVEHFIQAVGSYEDRIFQKRARLHQKQADRIKR
EKGQARRGDDVEPQVQPSLVAVGRFHGSRLASGPSPSPYEQSGVGKAMSKFSGMKIKHKQ
SLESDGSGSPGRLNKVARLSSGASIGSAIVEAENTLEIDIYENKEDLKTKLKEVLREKSD
VFNSNNPEEDKIKLGVPGWRERYYVEKFSAKTPEELDDIRNDVVLRYTEGLCWVMHYYYE
GVCSWQWFYPYHYAPFASDLKGLGELDISFNLGTPFKPFNQLLGVFPAASSHALPEQYRK
LMTDQNSPIIDFYPLDFEVDMNGKRYSWQGIAKLPFIDETRLLAEVKKIEHTLTDEEVRR
NSVMFDMLFVTSSHPLSVSIYSLDNRCKQLTEKERTEVKEKINPEHSGGMNGYISPCLGE
LCPPIFRSPVEGLEDVMDNQVICAIYRLPDAHKHITQPPARVNLPLKTVSMGDMKPDPVL
WHEDSGRRHHHQDKGRYGDNGRPNPPGAISGQHLGDAAHRLVVNSLQMRGDRNGHSNWQT
PQMSHTAPPFYPGKPPHTDYRSRDQADYRMPPGRQNYSHGHHRPTNPNAMRGHRDHGYHQ
QFPPSASGHRVDMRPHSQHYNRGYNQVNSQYVDENPEAYYPSRPHQGDMPPYPHRPTLHP
PTYESGYNYNQGPGSSSSQHHGGAWAPLPGNNSAPRAYGHQYGNQFSALDRRGNGRPSST
PHGYDGRR
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagccttctataggtggttagcagagaagtatcctttggtggttgtggat
gtagttgaggaagaaccggttgtgatagatggcattgccattccagttgatacgagcaaa
cccaatccaaacaatcttgaatttgataacctctacctcgacatgaatggcattattcat
ccttgctttcatcctgaagataggccttctccaacaacttatgctgaggtatttcaatgc
atgtttgattacatcgataggctttttgtcatggtgcggcctagaaaattgctatatatg
gctattgatggcgttgcccctagggccaaaatgaatcaacagcgatctcggcgatttaga
gctgcaaaagatgcagcagatgcggcagctgaagaggcacgacttagagaagagttcgag
agggagggacgaaagcttcccccaaagcaggagtcacaagtttttgattccaatgttatc
actcctggaacggactttatggctgtgctgtccattgctttgcagtactacattcatctt
agactaaacaatgaccctggttggaaaaatactaaggtcattctttctgatgccaatgtt
ccgggtgaaggggaacacaaaataatgtcctatattcgtcttcagagaaatcttcctggt
tttgatccaaatactcgtcactgcctgtatggtttggatgcagatttgataatgttggca
ttggccacccatgaagtccatttttcaattctgcgtgagattgttttcactcctggacag
caagaaaaatgctttttgtgtggccaattgggtcattttgcatctgactgcgagggtaag
gccaagagaaaggctggagagtttgatgagaaaggtgaagatgttgtagttaaaaaacct
taccagtttctccatatttggacacttagagagtatttggagcatgagatgcgaattccg
aatgctccctttgaaatcgaccttgaacgcattgtggatgattttgtgttcatgtgtttc
tttgttggcaatgactttttaccccatatgcccacattggagatccgggagggtgcaatt
aacttgttattggcggtgtacaagaaggaatttagggcacttggtgggtatttgactgat
ggaagcaagccaaatttgcgaagggtggaacatttcattcaagctgttggaagttatgaa
gataggatattccagaaaagagctagacttcatcagaagcaggcagatagaataaagcgt
gaaaaaggtcaggcaagaagaggagatgacgtggagcctcaggttcaaccttcccttgtt
gcagttggtcgttttcatggatctcgtcttgcttcgggtccttctccttcgccgtatgaa
caatcaggagttggaaaagccatgtccaaattttcaggaatgaaaattaagcataagcaa
tcattggaatctgatggtagcggttcccctggtcggcttaacaaagttgcacgcctatca
tctggggcttccattggttctgctatcgttgaagcggagaacactttggaaatagatatc
tacgagaacaaggaggacttgaagacaaagcttaaagaggtactacgtgagaagtctgat
gttttcaactcaaataatccggaagaggacaagattaaattgggggtacctgggtggaga
gagaggtattatgtggagaagttttcggcaaaaactccggaggaacttgatgacatacga
aatgatgttgttttgaggtacacagaaggcctatgttgggttatgcactattactatgaa
ggcgtttgttcttggcaatggttttatccctatcattatgcaccgtttgcttctgatctc
aagggtcttggtgagctggatatttcatttaatctaggcactcccttcaagccattcaat
cagctactgggtgttttccctgctgctagttctcacgcacttccagagcaatataggaaa
ttgatgacagatcagaactcacctattattgacttctatcctttggattttgaagtggat
atgaatggtaaacggtattcctggcagggtattgcaaaattgcctttcattgatgaaacc
cgccttcttgcagaggttaagaaaattgagcatacattgacggacgaagaggtgcggaga
aatagtgtgatgtttgacatgctttttgtgacatcttctcaccctctctctgttagcata
tactcacttgacaaccgctgtaagcagttgactgagaaagaacgtaccgaggttaaggag
aaaataaatcccgaacatagtggaggaatgaatggctatatctctccatgtttgggggag
ctttgccctccaatattcaggtctcctgttgagggcttggaggatgttatggacaaccaa
gtcatatgtgctatatatcgacttccggatgcacacaagcacatcactcaaccgcctgcc
agggtgaatcttcctttgaagactgtgagcatgggtgacatgaaacctgatcctgttttg
tggcatgaagattctggaaggaggcaccatcatcaggacaagggaagatacggtgataat
ggaaggccaaatcctcctggagccatttcaggtcaacacctaggggatgcagcacataga
cttgttgtcaacagcttgcagatgaggggagatcggaacggtcatagtaattggcagacg
ccccaaatgtcccatacggcaccaccattctatcccgggaaacctccacatacagattat
agatcacgagatcaagctgactataggatgccaccaggtagacaaaactactcccatggt
catcaccgaccaacaaatcccaacgcgatgcgaggccaccgggatcacgggtatcatcaa
caatttcctccatcggcttcaggtcatcgtgttgacatgagacctcattcccaacattat
aatagaggttacaatcaagtgaattcccaatatgtcgatgagaatcctgaagcttactac
ccatcacgtcctcatcagggtgacatgcctccctatccccatagacctacattgcacccg
ccaacatatgaaagcggttacaattacaaccaaggccctggatcatccagcagtcagcac
cacggtggcgcctgggctcccctgcctggcaacaacagtgccccacgagcatacggacac
caatatggaaaccagttttctgcacttgatagaagaggaaacgggagaccttcctcaaca
cctcatggctatgatggccgcaggtaa
DBGET
integrated database retrieval system
