Momordica charantia (bitter melon): 111014830
Help
Entry
111014830 CDS
T05045
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03020
RNA polymerase
mcha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111014830
09124 Replication and repair
03420 Nucleotide excision repair
111014830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111014830
03400 DNA repair and recombination proteins [BR:
mcha03400
]
111014830
Enzymes [BR:
mcha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111014830
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111014830
DNA repair and recombination proteins [BR:
mcha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111014830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111014830
NCBI-ProteinID:
XP_022145356
UniProt:
A0A6J1CV04
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI
DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL
EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP
EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGPSPEFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSNR
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccatactcgccggcggaggtcgccaaagtccgcatggttcagttc
ggcatactcagccccgacgagattaggcaaatgtctgtggtgcagattgagcatggtgaa
actacagagaggggcaagccgaaagtagctggtttgagtgacccacgacttggtacaatt
gacagaaaaatgaagtgtgaaacttgcactgcgaacatggccgagtgccctgggcacttt
gggcacctcgaactcgccaagccaatgtttcatattgggtttatgaagactgtgctcact
atcatgcggtctgtttgtttcaactgctcaaagattctagttgacgaggaggaccctaaa
tttaagcaagcattgcgaataaagaatcccaagaacaggctcaaaaagattttggatgcc
tgcaagaacaaaaccaagtgtgaaggtggagatgaaatcgatgtccaaggtcaagaatca
gaacaaccagtgaaaaagggtcggggtggctgtggtgctcagcagcctaagatctcaatc
gatggaatgaaaatggttgcagagtacaaggctcaaaggaagaaaaatgatgaccaggag
cagctgcctgagccggtggaaagaaaacagacacttagtgctgaaagggttcttggtgtt
ctgaagagaataagtgacgaggattgcaaactcttgggcctaaatccaaagtatgcccgg
cctgattggatgattctgcaagtccttccaattcctccacctcctgtgagaccatccgtt
atgatggacacctcatctagaagtgaggacgatctaactcatcagttggctatgattata
aggcacaacgaaaacctcaggaggcaagagagaaatggttctcctgcacatatcatttca
gagtttgcacaattattgcagtttcatatagccacgtattttgacaatgaattacctgga
ctgcccagggccacacagagatctgggaggcccattaaatctatatgcagtaggctcaag
gcaaaggaaggtcggatcagaggtaacttgatgggaaaacgtgtggatttttcagcaaga
acagttatcacacctgatccaacaattaatattgatgaattgggagtgccgtggagtatt
gctttgaatcttacatatccagagactgtgacaccatataatatagagaggttaaaggaa
ctcgttgagtatggtccccatcctccacccggtaaaactggtgcaaagtacattatacga
gatgacgggcagaggctcgatcttcgatatcttaagaaaagtagtgatcatcatttggag
cttggctacaaggtggaacgtcatttgaatgatggtgactttgtacttttcaatcgtcag
ccaagtcttcacaaaatgtctattatgggacacagaatcaagattatgccttactcaact
ttccgccttaatttatctgtcacatcaccttacaatgcagattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgagactagggcagaagtgttggagctcatgatggtt
cccaaatgcattgtgtcacctcagtcaaaccgtcctgtaatggggattgtgcaagatact
ctgttaggatgccgtaaaattacaaagagggatacctttataacaaaggatgttttcatg
aatatcttgatgtggtgggaagattttgatgggaaaattcctgcacctgcaatcttgaag
ccgcaacctctttggactggaaaacaagtttttaatcttattataccaaagcagattaat
ctcacaagaacttctgcctggcatgctgagtcggaaactggattcataactcctggggat
acgtttgttaggattgagaagggggagctaatttctggaactctttgcaagaaggctctt
ggaacatcaactggaagtctcatacatgttatttgggaggaggttggaccagatgcagcc
cgtaaatttcttggtcatacacaatggcttgtcaattactggcttttgcagaatgctttt
agcattggtattggagatacaattgctgatgcagcaaccatggagaaaattaatgaaact
atttctttagctaaaaatgaagtgaaaaaccttatcaagaaagcccaagagcggagttta
gagcctgaacctggacggactatgatggaatcttttgaaaataaagtgaaccaggtcttg
aacaaggctcgtgatgatgctggtagtagtgcgcaaaaaagtttgtcagagagtaacaat
ctgaaagccatggttactgcaggatccaagggcagttttatcaatatctcccagatgact
gcttgtgtggggcagcaaaatgttgaaggaaagcggataccatttggtttcatcgatcga
acattgccccatttcactaaagatgattatgggcctgagagtcgtggctttgtcgaaaac
tcatatcttcggggattgactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttattgatactgcagttaagacgtcagaaacagggtacatccagaggaggttggta
aaggccatggaggatatcatggtaaaatatgatgggactgttagaaactcattaggtgac
gttattcagtttctttatggtgaggatggtatggatgctgtctggattgaatctcagaaa
ctagattctttgaaaatgaagaaaaaagaatttgagaggattttcagatatgagtttgag
gatgaaaactggaagccaaattacatgttgccggagcatgttgaagatttaaaaaccatc
agagaattccgcaatgtgtttgaggctgaagttcaaaagcttgaagcagacaggtttcaa
ttgggaacagaaattgcaaccacaggtgaaaactcctggccaatgcctgttaacctcaaa
aggcttattcagaatgcacaaaagactttcaagattgactttcgaagggcttctgatatg
catcctatggaaatcgttgaagctattgacaaacttcaagaaaggctgaaggttgttcct
ggtgaagatcctttaagtgtggaggctcagaagaatgccaccctcttgttcaacatattg
cttagaagcacttttgctagcaaaagagttttggatgaatacaggcttacacgtgaagca
tttgagtgggttatcggagagatagaatcacgcttcttacaatcactagttgctcctggt
gaaatgattggctgtgttgctgcacaatccattggagagccagccactcagatgactctt
aataccttccattatgctggtgtcagtgccaagaatgtcacccttggtgttcctaggttg
agggaaatcattaatgtagccaagagaatcaaaacaccttcgctttcagtctatctaaaa
cctgaagctaataaaactaaggagagagctaagactgttcagtgtgctttggaatatact
actcttaggagtgttacgcaagccacggaagtttggtatgatcctgaccccatgagcaca
attattgaagaggatattgattttgtgaagtcttattatgagatgccagatgaagaaatt
tcccctgacaaaatttccccatggttgcttcgtatagagttgaatcgtgaaatgatggtg
gataagaaattaagcatggcaaatattgctgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataacgctgagaagctgatacttcgtattcgtatcatg
aatgatgaagccccgaagggggagttgactgacgaatcagctgaagatgatgtattcttg
aagaaaattgagagcaatatgctaactgaaatggcacttcgaggaataccagacatcaac
aaggttttcattaaatgtggtaaagtgaacaagtttgatgagtatgaaggttttaagcca
gagatggagtggatgctggatacagaaggtgtcaatcttttagctgtcatatgtcatgaa
gatgttgatgcaaagaggaccacaagcaatcatttgattgaagtcattgaagttcttggg
attgaggcagttcgacgttctctcctagatgaattgcgtgttgttatttcctttgatggg
tcttatgttaattaccgacatcttgctatcctttgtgacacaatgacctatcgtggccac
ttgatggcaattacacgtcatggtattaatcgaaatgatactggaccaatgatgagatgc
tcatttgaagaaactgtggatattttgcttgatgctgcagtgtatgctgaaaccgatcac
ttgcggggtgttactgaaaatataatgttgggtcaactggcacccataggaacaggaggt
tgtgctttgtatctcaatgatgagatgttgaagaatgctattgaactccagcttcctagt
tacatagacggtctggattttggcatgacgccttcccgttccccaatctcaggcactcct
tatcatgaagggatgatgtctcctagttatttgctgagtccaaatctacgcctttcaccc
attagtgatgctcaattttcaccctatgtcggaggaatggctttctctcctacttcatct
ccaggctatagcccatcatctccgggctacagtccatcatcacctggctatagtcctaca
tcccctggttatagtcccacttctccgggatacagccccacctctcctggctacagtcca
acgtctccaacctacagtcctagttctcctggttatagcccaactagtcctgcatattct
cctacgagtccatcctattcacccacctctcctagttacagccccacctctccaagttac
agccccacctcccctagttacagtcccacgtctccaagctacagccccacatcaccaagc
tacagccccacttcacctgcttacagtcccacttcacctgcttacagtcccacttcaccc
gcatatagcccaacttccccatcttatagcccaacatcaccctcttacagccctacctcg
ccttcttatagccccacgtcaccctcgtacagcccaacatccccttcctacagtcctaca
tcaccttcatacagccccacctctccagcatacagccccacctctcctggctatagccct
acatccccgagctatagccccacttctccaagctatagtcccacatcacccagttataat
cctcaatcagctaagtacagcccatcacaggcatactcacctagtagtccacggttgtcg
ccttcaagtccatatagcccaacctcgccaaactacagcccgacgtcaccatcatattca
ccaacatctccggcttattctccatcaagcccaacctacagtcctagcagtccatataat
acaggacccagcccagaatttagccccagttctccacaatatagtccaagcgcaggatat
tcgcctactgctcctgggtattctccatcatctactagtcagtacactccgcaaacgagt
gagaaggatgatagaagtagaaaggatgacaggagcaaccgatga
DBGET
integrated database retrieval system
