Momordica charantia (bitter melon): 111015420
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Entry
111015420 CDS
T05045
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111015420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111015420
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111015420
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111015420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111015420
NCBI-ProteinID:
XP_022146126
UniProt:
A0A6J1CYE2
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSGLLNSSLSGSASNLPDGSGRSFTASFSGQSGAASPVFHHTGTIQGLHNIHGSFNVQNM
SGALTSRNSTINNVPSGGVQQPTGTLSSGRFASNNLPVALSXLSHGSSHGHSGVANRGXI
NVVGNPGFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGTRITSSMGNMVS
GGNIGRSITSGGGLSLPGLASRLNISANSGSGSLTVQGQNRLMGGVLPQGSQQVISMLGS
SYPTAGGPLSQNHIQSVNSLSSLGMLNDVNSNDNSPFDINDFPQLSSRPSSAGGPQGQLS
SLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQTEQHENSVPMXQSQQFS
IGRSAGFNLGSTYSHRPQQQQQQHSPAVSNSTVSFSPGNNQDLLHLHGSDIFPSSHAASY
HQQSSGPPGIGLRPLNSPNSASGMSYDQLIQQYQQHHGQSQFRLQHMSGVSQSFRDQGMK
SMQAAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSD
EPAKGDPDFNVPQCYLIKPPPTLHQGYFLKFSLETLFYIFFSMPKDEAQLYAANELYNRG
WFYHKEHRFWFIRVPNIEPLVKMSTYERGSYHCFDPHTFETVRKDNFVLHYEMLEKRPAL
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttactcaattcatctcttagtggatcagcttcaaatcttccagatggcagt
ggacgatcttttactgcctcattttctggtcagtctggtgcagcctctcctgttttccat
cacactggaactattcaagggctgcataacatacatgggagcttcaatgttcaaaacatg
tcaggtgcactaacttcaagaaattcaacgataaataatgttccatctggtggggtgcag
caacctactggaacactatcaagtgggcgttttgcatcaaacaaccttcctgttgctctt
tctcwgttgtctcacggcagctctcatgggcactcaggagtcgcaaatagaggagktata
aatgttgtaggaaaccctggatttagtagcagcacaaatgcagttggsggttctattcct
gggattttgtctacttctgcagctattggtaatcgaaatgctgttccaggattgggkgtg
tccccgattttgggaaatgcgggtactcgtatcacaagttcaatggggaatatggtaagt
ggaggcaacataggaaggagtataacttctggtgggggattgtcattacctggtcttgct
tctcgtctaaacattagtgcaaatagtggatctggaagtttaactgtgcaaggacaaaac
cgtttaatgggtggtgttcttccacaaggatctcaacaggttatttctatgttgggtagt
tcttatcctactgctggaggaccactttcccaaaaccatatacagagtgtgaatagtctg
agttctctgggaatgttgaatgatgtsaactccaatgacaattctccttttgacatcaat
gattttcctcagytgtctagtcgtccaagttctgcaggagggcctcaagggcaattaagt
tcgctgagaaagcaaggccttagtcctattgtccaacaaaaccaggagttcagcattcar
aatgaagattttccagccttgccgagatttaaaggtggcaatgctgattatggtatggat
attcatcagacagaacaacatgaaaattctgtgcctatgrtgcagtctcagcagttctct
attggaaggtctgctggatttaacttagggagcacatattcacatcgaccccagcagcag
cagcagcagcattctcctgcagttagtaacagcacggtctcsttttcacctggaaataat
caggatcttcttcatttacatggatccgatattttcccatcttcacatgctgcatcctat
caccagcagtctagtggacctcctggaattggtttaagacccctgaactctcctaattca
gcttctggaatgagttatgaccaacttatccagcagtatcagcagcatcatggtcaatcg
cagttccgattgcaacatatgtctggcgttagccagtcrtttagggatcagggcatgaaa
tctatgcaggcggctcaatcttctcctgatccatttggtttacttggtttgttaagtgta
ataaggttgagtgatcctgatctcgcatccctcgcacttggaattgatttgaccacatta
ggattaaatttgaattcagcagataatcttcacaagacttttgggtccccatggtctgat
gagcctgctaagggcgatccagatttcaatgtacctcagtgttatcttattaaaccacct
cctactctacatcaagggtacttcttaaagttcagtctagagacactgttctatatattc
ttcagtatgccaaaagatgaagctcagttgtatgcagcaaatgaactttataatagaggc
tggttttatcacaaagaacatcggttctggttcattcgggtccctaacattgaaccactt
gtgaagatgagcacttacgagagaggatcgtatcactgtttcgacccccacacatttgaa
actgtccgcaaggataatttcgtcctgcactacgagatgttagaaaagagaccagctcta
cctcaacattag
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