Momordica charantia (bitter melon): 111018640
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Entry
111018640 CDS
T05045
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111018640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111018640
03012 Translation factors [BR:
mcha03012
]
111018640
Enzymes [BR:
mcha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111018640
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111018640
Translation factors [BR:
mcha03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111018640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
PhoH
AAA_23
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111018640
NCBI-ProteinID:
XP_022150502
UniProt:
A0A6J1DAW4
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MHNFKRLPNFLLVLSKNITCDLSINRARLLKLPILSPSYAVSRVWRGSYHYAAEQFSDDE
YECDVENNTASSSVANIDEWKWKLSLLSRNDKDQEIVSRDKRDKRDFEQISNLAKKMGLY
CSMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLSLQRRVEGLLQEHCDRVQLSSGKAS
EISNSAKSIDQVKDVNMDESEDSYLDGSVMEKVLQRRSLRMRNMQRAWQESPEGRKILDF
RRSLPAFKEKERLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSIICTQ
PRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLN
GITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAPTIHI
PGFTFPVRAYFLEDVLELTGYKLTSFNQIDDYGQDKMWKTQKQLAPRKRKNQITALVEDA
LDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERTGAVLVFLTGWEDISSLR
DQLRAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPAQNVRKVVLATNMAEASITINDVV
FVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVFEAFS
EYQLPELLRTPLNSLCLQIKSLQVTSVGEFLSSALQPPEPLAVQNAIDFLKMIGAFDEKE
NLTNLGNFLSMLPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLAGTA
KARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSVQTLQAIDSLRRQFSFILK
EAGLIDLDGSTNNKLSHNQPLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLYANS
VNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVNRGIQAGHLKMLHGYI
EFFMDSNLAECYLQLKEELDKLIENKLQNPGLDILKEGKYLVLSVQELVSGDQCEGRFVF
GRESKKQVSGDDSKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQ
FVGKPKKNKQLAERDAAIEALAWLTHTSDNSANSDDDSPIDVTDNMLKLLGKRRRSKRRP
G
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaagcggcttccaaattttctcctagtattatcgaagaacatcacctgt
gacctatctatcaatcgcgcgaggctgcttaaactgcctattctgtctccttcttatgct
gtttcccgagtctggcgaggttcgtatcattatgctgcggagcaattctcggacgacgag
tacgagtgcgatgttgagaacaatacggcctcgtcttctgtggcaaacattgatgagtgg
aaatggaaacttagcttgctatctcgaaatgataaggatcaagagattgtgtccagagat
aagagagataagagagactttgagcagatctcaaaccttgccaaaaagatggggctttat
tgttcaatgtatggaaaagtggtagttgcaagtaaagttccccttcctaactatcgacca
gatttggatgataagcgaccacaaagggaggtagttgttcctttaagtttgcaaaggagg
gtggaaggtttactgcaggaacattgtgatcgcgttcagctaagttctggaaaggctagc
gagatttcaaacagcgccaagtctattgaccaggttaaagatgtgaatatggatgaaagc
gaagattcttatcttgatgggtctgttatggaaaaggtactccagaggagaagtttacga
atgcggaatatgcaaagagcatggcaggaatcacctgaagggaggaagatactggatttc
aggagatctctgccagcattcaaggagaaggaaaggctacttcaggctattgcacaaaat
caggtagtagttatatctggagaaactggatgcggtaagactacacaacttcctcagtat
ctgctagaatcagaaattgaaactggtcgaggagcgttctgtagcataatatgtactcaa
cctcgaagaatctctgctatggctgtttcagaaagagtgtccatagagcggggagagccc
cttggtgaaacagttggctataaagttcgattagaaggtatgaaaggaaaaaacacccat
ctcttgttttgcaccagtggtatattacttcgaaggcttctaagtgatcgaaatctaaat
gggattactcatgtctttgtggatgaaattcacgagcgaggcatgaatgaagattttctg
ttgattgtcttgaaggatctcctcccacgccgccgggatttaagattaatcttgatgagt
gccactttaaatgccgaactcttttccagttattttggaggagcaccaactattcacatc
ccaggttttacatttccagtgagagcatactttttggaagatgtgttagaattaactggc
tataagttgacatctttcaaccaaattgatgattatggccaagacaagatgtggaaaaca
cagaaacaattagctccacgaaaaaggaaaaaccaaatcactgctcttgttgaggatgct
cttgataaatcaaccttgggaaattacagttccaacacacgagattccctctcatcttgg
atgcctgactgcataggttttaatctcatcgaggctgttttgtgccacatatgtcgaaag
gaacgaactggtgctgttctagtattcctgactggatgggaggatataagcagtttgagg
gatcaactgagagctcatccacttttaggagatcctaacagggttttgcttttgacatgc
catggttcaatggcaacatctgaacagagactcatatttgagaaaccagctcagaatgtt
cggaaagtagttcttgcgactaatatggcagaggcaagcatcacaataaatgatgttgtt
tttgttattgattgtggaaaggcaaaagaaaccacgtacgatgcgttaaacaatacacct
tgtctgttaccttcatggatatcacaggcttctgctcggcaaagaaggggtagggctggt
cgtgttcaaccaggaaaatgttatcatctgtacccaaaatgtgtttttgaagcattttct
gagtatcaacttcctgaacttttgagaactccattgaattctctctgccttcaaataaaa
agtttgcaggttacgagtgtaggagaattcttgtcatctgctctacaaccaccagaaccc
ttggctgtacaaaatgccattgattttctaaagatgattggggcatttgatgagaaggaa
aacttgacaaatctcggaaattttttgtcaatgcttcccgttgaccctaagctaggaaaa
atgctgattatgggtgccatctttcattgctttgatcctatccttactattgtttcgggc
cttagtgtcagagatccttttcttctacctcaggacaaaaaagatttagcagggacagcc
aaggctagattttctgcaaaggattacagtgatcatatggcgcttgtccgtgcttatgag
ggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggaggaacttcctt
tctgtccaaacacttcaagcaattgattcacttagaagacagttcagcttcattttaaag
gaggcaggattaatagatttagatggtagcacgaataataagctaagccataaccagcct
cttgttcgtgcaatcatttgttctggtctctttccgggcgtagcatctgttgtgcaccga
gagacatccatgtctttcaaaaccatggatgatggccaggtcttgctgtatgcgaattct
gtaaatgcacgttatgataccattccttttccgtggctggtctttggcgagaaagtgaag
gtcaatacggttttcttacgagattccactggcatatctgattctatgctgattcttttt
ggaggtgcagtaaatcgtggtatacaggctggtcatttgaaaatgttacatggctacatt
gaattttttatggactctaatttggcggaatgctatttgcaactcaaggaagaactcgat
aagcttattgaaaacaaacttcagaacccgggccttgatattctcaaggaaggcaagtac
cttgttctttctgttcaagagttggtgtcaggtgaccaatgtgaagggagattcgtcttc
ggtcgggaaagtaagaagcaagtgtcgggcgatgatagtaaattcacaaaggacggcacc
aatccaaagagcttgctacaaaccttgctaatgagagcaggacattcccctccaaaatac
aaaaccaagcacctcaagacaaatgagttcagggcgctggttgaatttaagggtatgcaa
tttgtgggtaagcctaagaaaaacaagcagcttgcagagagggatgctgctatagaggct
ctggcctggttgacacacacctccgacaacagtgcgaattcagacgacgattctcctatt
gatgtaactgacaacatgctaaaacttcttggcaaacgaaggcggtctaaacgccgccct
ggttaa
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