Momordica charantia (bitter melon): 111019334
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Entry
111019334 CDS
T05045
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111019334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111019334
03012 Translation factors [BR:
mcha03012
]
111019334
Enzymes [BR:
mcha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111019334
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111019334
Translation factors [BR:
mcha03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111019334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
111019334
NCBI-ProteinID:
XP_022151380
UniProt:
A0A6J1DB04
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MSLRIFAASSHSLLSKDPFLAPRLSVLRPFISTFAMSHRPNYQGGRRGGSSGGGRGGARR
GGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKAAEMEVLNENEWWTKMDQMKRGGEQEM
IIKRNFSRSDQEILSDMAHQQGLYFHAYNTGKTLVVSKVPLPDYRADLDERHGSTQKEIR
MTTEMERRVGNLLDNSHGQGRDHNVSSTASVGASKQLPTSVNSTKPAYKLGTDTAKDKFS
AELQQKQEQMKVNLLFFCNDILSLYTCKYRVTYYALQGSDGLKAMLAFREKLPAFKVKSE
FLKAMTENQVLVVSGETGCGKTTQLPQFILEEEISKLRGADCRIICTQPRRISAISVAAR
ISAERGENLGETVGYQIRLEAKQSAQTRLLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHE
RGMNEDFLLIILRNLLTQRPDLRLILMSATINADLFSKYFANAPTLHIPGKTFPVTEFFL
EDVLEKTRYNIKSESENFEGNSRRRRRQQESKKDPLSELFEDVDIDTEYKNYSTSTRKSL
EAWSGAQLDLTLVESTIEYICRHEGHGAILVFLTGWDDISKLLEKVKANNYLGDPGKFLV
LPVHGSMPTINQREIFDSPPPTKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALN
KLACLLPSWVSKASAHQRRGRAGRVQPGVCYRLYPKIIHDAMLQYQLPEILRTPLQELCL
HIKSLQLGTVGSFLAQALQPPDPLAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPN
IGKMLLMGSIFQCLNPALTIAAALAHRDPFILPINRKEEANDAKKSFAGDSCSDHVALLK
AFEGWKDAKRNGGDRSFCWDNFLSPVTLQMMDDMRMQFLDLLSDIGFVNKSRGPSTYNQY
SHDLEMVCAVLCAGLYPNVVQCKRRGKRTAFYTKEVGKVDIHPGSVNAGVHLLPLPYMVY
SEKVKTTSIFIRDSTNISDYALLLFGGNLVPSRSGDGIEMLGGYLHFSASKSVLDLIKKL
RGELDKLLNRKIEEPGFDISTEGKGVVAAAVELLHSQVHH
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccgaatcttcgccgcttctagccactctctacttagcaaggacccatttctc
gcgcctcgactctctgtacttcggccattcatttcaacgttcgcaatgtctcatcggccc
aactatcaaggcggccgtcgaggcggctcttcgggaggaggacgcggtggcgcccgacgt
ggcggaggcggaggcggtggcggtggcagaggcggcggtggtagaggcgagcaacgttgg
tgggacccagtctggcgggccgagcgtctgagacaaaaggctgctgagatggaggttctt
aatgaaaatgaatggtggactaagatggaccagatgaaaagaggaggggaacaagagatg
ataattaagcgtaatttcagtcgaagtgaccaagaaatcctttctgatatggctcatcag
cagggtctttacttccatgcatataatacggggaagacccttgtggttagtaaagttccg
ttgccagattaccgggctgatcttgatgaacgccatgggtccacgcagaaggagattcgt
atgactacagaaatggagaggagagttggaaatcttttggataactcacatggtcaggga
agagaccataatgtttcttccactgcatcagttggagcaagcaaacagttaccaacttct
gtaaatagcacaaaacctgcctacaagttggggactgatactgcaaaggataaatttagt
gctgaacttcagcagaaacaagaacagatgaaagtaaatttgctattcttttgcaatgat
attctctctctctatacatgtaaatatcgtgttacctattatgcattgcagggaagtgat
ggcttgaaagcaatgctggcatttagagaaaagcttcctgccttcaaagtraagtctgaa
tttttaaaagcaatgacagaaaaccaggtattggttgtttcaggagagacaggttgtggt
aaaaccacacagctccctcaatttattttagaagaggagatatcaaaacttcgtggtgct
gactgtaggataatatgcacccaacctcggcgtatatctgctatttcagttgctgctcgt
atatccgctgaaaggggagaaaatcttggtgaaacagttggatatcagatacgactggaa
gcgaaacaatcagcccagacacgactactattttgcactactggagttctactccggcag
ttggttcaggacccacaattgactggtgttagccatttgcttgtggatgaaatacatgaa
agaggcatgaatgaggactttttattaataattctgcggaaccttcttactcagcggcca
gatttacgtcttattttaatgagtgccaccatcaatgcagacttgttctccaaatacttt
gcgaatgccccaaccctacacataccaggaaaaacatttcctgtgacagagttctttctt
gaggatgtgctggagaaaactcgttataatatcaagtcagagtctgaaaattttgaagga
aattcaaggagaagaaggagacagcaggaatctaagaaggatccattatcagaattattt
gaggatgttgatattgatactgagtacaaaaattatagtacatctacgagaaaatcactt
gaagcctggtctggagcacaacttgatttgactctggtggagtcaactattgagtatatt
tgtcgccatgagggtcatggtgctattcttgtattccttactggttgggatgacatttct
aaactgcttgagaaagttaaagcaaacaattatcttggagatcctggaaagttcttagtt
cttccagtacatggttccatgccaaccattaatcagcgtgaaatatttgatagtcctccc
cccaccaaaagaaaaattgtgctggcaactaatattgctgagagtagtatcaccatagat
gatgttgtctatgtcatagattgtggaaaagcaaaggaaacaagttatgatgctctgaac
aagcttgcttgtctgttaccatcatgggtttccaaggcttcagcacatcagaggcgaggt
cgtgctggtcgtgtgcaacctggtgtttgttatagactctatccaaaaattatccatgat
gcaatgcttcagtatcagttgcctgaaattctgagaactcctttacaagagctttgtctg
catatcaaaagtttgcagctaggtactgttggatcatttttggcacaggcattacaacca
ccagatcctcttgcagtccagaatgccattgaacttctcaaaacaattggtgctttagat
gatatggaggagcttacaccactgggccgtcatctttgcactctacctctggacccaaat
atagggaaaatgcttctcatgggttctatatttcaatgcctcaatcccgccttgaccatt
gctgctgctctggctcaccgtgatccatttatcttgcccataaataggaaagaggaagca
aatgatgcaaagaaatcatttgccggtgattcttgcagtgaccatgttgctcttcttaaa
gcctttgaaggatggaaggatgcaaaaagaaatggaggtgacagatcgttctgttgggat
aactttttatctccagtaaccttgcagatgatggatgacatgagaatgcagtttctggat
cttctatctgatattggctttgtgaacaagtctaggggtccaagtacatacaaccaatac
agccacgatttggagatggtctgtgcagtgctctgtgctggattatatccaaatgtcgtg
caatgtaaacgaagaggaaagaggacagccttctacactaaggaagttgggaaagtggat
attcatcccggatctgttaatgcaggggttcatctcttgcccctaccttacatggtttac
agtgagaaggtcaaaacaaccagtatattcattagagactctaccaatatatcagattat
gccttattgttgttcggtggtaatcttgtacctagcagaagtggagatggcattgaaatg
ctcggtggctaccttcatttttctgcatcaaagagcgttttagatttaataaagaaattg
cgtggcgaactcgacaagcttctgaataggaagattgaggagccaggctttgacatttct
acagaaggaaagggagttgtggcagctgcagttgagttattacacagtcaagttcatcat
taa
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