Momordica charantia (bitter melon): 111019375
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Entry
111019375 CDS
T05045
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111019375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111019375
03041 Spliceosome [BR:
mcha03041
]
111019375
03036 Chromosome and associated proteins [BR:
mcha03036
]
111019375
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111019375
Spliceosome [BR:
mcha03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111019375
Complex B
111019375
Complex C
U2 SnRNP specific factors
111019375
Chromosome and associated proteins [BR:
mcha03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111019375
TFTC complex
111019375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111019375
NCBI-ProteinID:
XP_022151440
UniProt:
A0A6J1DB60
LinkDB
All DBs
Position
Unknown
AA seq
1378 aa
AA seq
DB search
MAVSEEECSSTKSRSSSSTSTSTYYLAKCVLRGSIVLQVLYGHIRSPTSLDVVFGKETSI
ELVAIGEDGVVQSVCEQAVFGTIKDMAILPWNERFRPSYTQMLGKDLLIVISDSGKLSFL
TFCNEMHRFLPITHIQLSNPGNSRSQIGRMLASDSSGCFFAASAYENRLALFSTSISAGS
DIVDKRITYPSESEGDSIGPRSMQKTSICGTIWSMCFISKDHGHLTQDNNPVLAVLLNRR
GAILNELLLLGWNMREQIIYVISQYLEDGPLAYEVVEVPKSYGFALLFRVGDALLMDLRD
AKSPCCVHRIGLHFPTNVEQNFIEESYKVQDADDEGLFNFAACALLELRDYDPMCIDSDD
GSPNTNQNHVCSWSWEPGNDRNQRMIFCMDTGELFMIEMNFDSDGLKVNQSACLYRGLPY
KELLWVEGGYLAALVEMGDGMVLKLENGRLIYANPIQNIAPILDMSVVDKHDEKHDQMFA
CCGMAPDGSLRIIRNGISVENLLRTASIYQGITGIWTSKMKLSDAYHSYMVLSFVEETRV
LSVGLSFIDVTDSVGFQSDICTLACGLIDDGILVQIHQNAVRLCLPTKVAHSEGIELSSP
ACTSWFPDNIGISLGAVGHNMIVVSTSNPCILFILGVRKLSEYNYEIYEKQYLRLQNELS
CISIPEKHFSQKESSFSMNSVENNIISTLLNGVSSDNIIVIGTHRPSVEILYFVPSVGLI
VLASGTISLMNILGNAVSGCIPQDVRLVLVDRFYILTGLRNGMLLRFEWHHTTMMNSSHM
PSHSPVVPFLSTCLDSFGKELYNTTILEKHEDKIPSSLQLIAIRRIGITPVFLVPLTDRL
DSDIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVRSAECPNGLLFVAESSLHLVEMV
HTKRLNVQKFQLGGTPRKVLYHSESKLLLVMRTQLINDTCSSDICCVDPLSGSILSSFKL
EIGETGKSMELVKNGNEQILVVGTSLSSGPAIMPSGEAESTKGRLIVLCLEHVQNSDTGS
MNFCSKAGLSSLQTSPFREIVGYATEQLSSSSLCSSPDDASSDGIKLEETEAWQLRVVYS
TTWPGMVLAICPYLDRYFLASAGNAFYVCGFPSDNSQRVKRLAVGRTRFMITSLTAHVTR
IAVGDCRDGILFYSYQEDAKKLEQIYSDPSQRLVADCILLDVDTAVVSDRKGSIAILSCS
DRLEDNASPECNLMLNCAYYMGEISMSLRKGSFSYKLPADDLLRGCAGTGSDFDSSHNTI
IASTLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTRPILGNDHYEYRSRENPTGVPKIL
DGDILTQFLELTSMQQESVLSSPVGSRNAAKSSGKSLPASIPINQVVQLLERIHYALN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaggaatgttcgtccacgaagtcgcgatcttcgtcttcaacttct
acttcaacctattacttggctaagtgcgttctcagaggcagcatcgtcctccaggtcctc
tacggccacatacgctctccgacctccctcgatgtcgtctttggcaaggagacatcgata
gagttggttgcaataggcgaagatggggttgtacaatctgtatgtgagcaggctgtattt
ggcaccattaaagatatggccatcctaccatggaatgagaggttccgcccatcatacaca
cagatgctgggtaaggatcttctcattgtaatctctgattctggaaagctttcatttttg
acattttgcaatgaaatgcacaggtttctccctataacacatattcagctttccaatcct
ggaaattcaaggagtcaaattgggagaatgctggcttcagattccagtggctgctttttt
gctgctagtgcatatgaaaaccgattggctttattctccacttcaatctctgctggtagt
gatattgttgataagagaataacttatccttctgagagtgaaggagattcgattggacct
cgaagcatgcagaaaaccagtatatgtgggaccatatggagtatgtgcttcatttcaaaa
gatcatggccaccttacacaggacaacaatcctgtactagccgttcttcttaataggaga
ggagcgattttgaatgagctgctattacttggatggaatatgagagaacaaattatatat
gttatctctcagtatttagaagatggacctctggcatacgaagttgttgaagttcctaaa
tcttatggatttgcactcctatttagggttggtgatgctctcttgatggatcttagagac
gccaagagcccctgttgtgtccatagaataggcttacacttcccaaccaacgtggaacaa
aattttattgaagagtcatataaagtacaagatgcagatgatgaaggactatttaatttt
gctgcatgtgcactgctggaactaagggattatgatcccatgtgcatagacagcgatgat
ggaagtccgaatactaaccagaatcatgtgtgctcttggagttgggaaccaggcaatgac
agaaaccaaaggatgattttctgcatggatactggagaacttttcatgatagaaatgaat
tttgactccgatggtctgaaagtgaatcagtctgcttgtctttatagaggtctaccatac
aaggagcttttgtgggttgaaggaggatatttggcagcactggtggaaatgggggatgga
atggtcctgaaattagagaatggaaggctgatatatgcaaatcccatccagaatattgct
cctattctggatatgtcagttgttgataagcatgatgagaaacatgaccaaatgttcgcc
tgctgtggaatggcacctgatgggtctttaaggattattcgaaatggtattagtgtagaa
aatctgttgaggactgcttcgatttatcaaggcataacgggtatctggactagtaaaatg
aaactaagcgatgcttatcattcatatatggtattatcatttgttgaagagaccagggtt
ctatcagttggcttgagttttattgatgtcaccgattcagttggtttccagtctgacatt
tgtactttggcatgtggtcttatagatgatggcatactggttcaaatacatcaaaatgca
gtaaggctatgtttacccaccaaggtcgctcattctgaaggcattgaattatcttctcca
gcttgcacatcttggtttccagataatattggtatcagcttgggtgcagttggacataat
atgattgttgtttccacgtctaacccgtgcatcttatttattcttggagttcgaaagctt
tcagaatataactatgaaatatatgaaaagcaatatttgagattgcagaatgaattgtca
tgcatttcaattcccgaaaaacatttttcccaaaaagaatccagtttttctatgaattcg
gtagaaaataacattatttccactctactaaacggggttagcagtgataatattattgtt
attggcacccataggccttcggtggaaattttgtatttcgttccctctgtaggtctaatt
gtccttgcttcgggaactatttcattgatgaacattttaggcaatgctgttagtggatgc
attcctcaagatgtgagacttgttttagttgacaggttttatattcttacgggactgagg
aatggaatgttgcttcgctttgagtggcatcatactactatgatgaactcatctcacatg
cctagccacagtcctgttgttccctttttgtcaacttgtcttgattcttttggcaaagaa
ttgtataatactacgatattggagaagcacgaggataaaattccttctagtcttcaattg
attgctattcggcgcattgggatcactcctgtttttctggttcctttgactgatagactg
gattctgatataattgctctaagtgataggccgtggttgttacatagtgcaaggcacagt
ctttcatacacttccatttcatttcaaccgtcaacacatgtgactcctgtgcgttctgct
gaatgcccgaatggactactatttgttgcggaaagcagtctacatttggtagagatggta
cataccaagagacttaatgtgcagaagtttcagcttgggggcaccccaaggaaggttcta
tatcacagtgagagcaaattactacttgtgatgaggactcaattgattaatgatacatgt
tcatctgacatatgttgtgtagatccccttagtgggtcaattttatcatcgttcaagctt
gaaattggagagacgggaaaatccatggagttagtgaagaatggaaacgaacaaattctt
gtggttggaacaagcttgtcttctggtcctgccataatgcccagtggcgaagctgaaagt
accaagggtcggctgatcgtcctttgcctcgaacatgtgcaaaactcagatactggctca
atgaatttttgttcaaaggcaggattatcttctctgcaaacctcaccatttcgagaaatt
gttggatatgctacagaacagttatcaagcagtagtctttgtagcagtccagatgatgca
agctccgatgggataaagctcgaggaaacagaagcttggcaattacgagtagtttattca
actacctggcccggaatggttcttgctatctgtccttatcttgatcgttatttcctggca
tctgctggtaatgctttttatgtatgtggtttcccaagtgataattcccaaagggtgaaa
aggttagcagttgggaggacacgttttatgataacatctttgactgctcatgttactaga
attgctgttggggattgtcgtgatggtattcttttttactcatatcaagaggatgctaaa
aagctggagcaaatttactctgatccatcacagaggctagttgctgattgtattcttttg
gacgttgacactgctgttgtttcagatcgcaagggaagcattgctatcctatcatgttct
gatcgtttagaagataatgcaagtccagaatgcaacttaatgctgaactgtgcttattac
atgggtgaaatttccatgagcttgaggaaaggatctttttcttacaaacttccagctgat
gatttgttgagaggttgtgctggcactggctctgattttgactcatcacacaacactatt
attgccagtacattattagggagcattgtgatcttcactcctctatcgagggatgaatat
gaacttctagaagctgtccaggctaaacttgccgttcatccactaactcgtccaattttg
gggaatgatcattatgagtatcgtagccgtgaaaacccaaccggtgttccaaaaatactt
gatggggacattctgactcagttcttggagcttacaagcatgcaacaagagtcagtatta
tcatcacctgttggctctcgaaatgcagcaaaatcaagcgggaagtcgttgcctgcatcc
atccccatcaatcaggttgtgcaacttcttgagagaattcattatgccctcaattag
DBGET
integrated database retrieval system
