KEGG   Momordica charantia (bitter melon): 111019808
Entry
111019808         CDS       T05045                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111019808
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mcha03041]
    111019808
Spliceosome [BR:mcha03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111019808
 Complex C
   U5 SnRNP specific factors
    111019808
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 EIF3I WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_HPS5 eIF2A Beta-prop_RIG_1st Beta-prop_WDR75_2nd Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_DCAF12 Nbas_N
Other DBs
NCBI-GeneID: 111019808
NCBI-ProteinID: XP_022151978
UniProt: A0A6J1DDM1
LinkDB
Position
Unknown
AA seq 345 aa
MQVVPSEGGNALATVGPRPMEWSTVPYSAPQGPGPNGKQRTSSLESSIMLLTGHQSAIYT
LKFNPAGDVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGFQIVTASPDK
TLRAWDVETGKQVKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV
WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagttgttccctcagaaggagggaatgctttggctacagttggtcctcggccaatg
gagtggtccactgttccatatagtgctcctcaaggacctgggccaaatgggaagcagcgg
acctcaagtctggaatcatcgatcatgttgttgacaggccatcagagtgccatttataca
ttaaagtttaatccagctggagacgtgattgcatctgggtctcacgacaaggaaattttc
ctatggaacgttcatggtgattgcaagaactttatggttttgagagggcacaagaatgca
gttctagaccttcattggactacggatggatttcagatagttactgccagccctgataaa
acgctgagagcatgggatgttgagactggaaaacaagttaagaagatggcagagcactcc
tcctttgtcaattcatgttgtcccacgagaagagggccaccgctaattgtcagcggatct
gatgatggaactgcaaaactttgggatatgcgtcaaaggggtgccattcaaacatttcca
gataaatatcagattacagcagtaagcttctccgatgcatcagataagatcttcacaggt
ggaatcgacaacgatgtcaaggtatgggatttgcgcaaaggtgaagtgatgatgacactc
caaggccatcaagatatgataactggaatgcagttgagtcctgatggttcttatcttctc
acaaatggaatggactgcaagctctgcatatgggacatgcgcccctatgccccccaaaac
cgatgcgtaaagatcttggaagggcaccaacataactttgaaaagaaccttctgaaatgt
agctggtctccagatggtagcaaagtcaccgcaggtagttcagatcggatggtttacgta
tgggatacgacttctcgacgtatcttgtataagcttcctgggcatactggatctgtcaat
gagtgtgtcttccatcccagtgagcctatcgttggatcttgcagtagtgataaacagata
tatcttggggagatttga

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