KEGG   Momordica charantia (bitter melon): 111020268
Entry
111020268         CDS       T05045                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03018  RNA degradation
mcha03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111020268
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111020268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111020268
   03041 Spliceosome [BR:mcha03041]
    111020268
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111020268
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111020268
Spliceosome [BR:mcha03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111020268
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 111020268
NCBI-ProteinID: XP_022152570
UniProt: A0A6J1DI46
LinkDB
Position
Unknown
AA seq 101 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASM
NT seq 306 nt   +upstreamnt  +downstreamnt
atgtctgggagaaaagaaactgttctggatttggctaagtttgtggacaaaggcgtccaa
gtgaagcttaccggtggcagacaagttacggggacgctgaaaggatatgatcaattgcta
aatcttgtgctggatgaagctatagagtttttaagagatcctgacgatccattgaagaca
acagaccaaactagacgtcttggcctaattgtttgcaggggaactgctgtaatgctcgtg
tctccagttgatggtacagacgagatcgctaacccctttatccaaccggacggtgcatcg
atgtaa

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