Momordica charantia (bitter melon): 111021794
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Entry
111021794 CDS
T05045
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111021794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111021794
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111021794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
111021794
NCBI-ProteinID:
XP_022154550
UniProt:
A0A6J1DJX0
LinkDB
All DBs
Position
Unknown
AA seq
938 aa
AA seq
DB search
MDVDQSDSQKPQTLQSLASGSLGSSLSRLSGSSRGIPADKDFHFYYNFDEFKIPIRSIER
QSQSMLETIGSSAGVWGKEMAFPEDTDDAYDWLVNVNDEIFERFDVSLDEFQRIRKEEEE
EESGRAVALTTADPDDGFQLVCGKKKKMPSHGDDLHDSSLESSVKVATKDRKTMGVKPKV
PFHIPTIRRPQDEFNILVNNSNQPFEHVWLQRSEDGSRFIHPLEKLSVLDFVDKIDEDFQ
PAYPPSLESTPFKFIEEVNDLKDLASKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTE
DFVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDIVWLQRDFGIYICNLFDTGQASRV
LKLERNSLEYLLHHYCGVAANKEYQNADWRLRPLPEEMLRYAREDTHYLLYIYDLMKMKL
SSMPRESEESDFPLVEVYKRSYDVCLHLYEKELLTESSYLYVYGLQGSGFNAQQLAVAAG
LFEWRDIVARSEDESTGYILPNKTLLEIAKQMPVNVSKLRRILKSKHPYLERNLASIVDI
IRHSMLNACAFEEVVERLKEARTEALATLEENASTNEQRETIVPDTSNLRHTIPIMKDGA
VDKSANDRICSPSSQSKVAPLEHGYRPFEPGKCIKVDHSLHPAMNGSRQVSQVGPTTSEP
SRHLNGDKYPVAQVTGVNISLQKKSNRGGLGALLGNSAPKRKLDTDKKDKEENKLDKIRS
SVALPFHSFSGTSEQLKPVTEPTMTALKTQNSEAPAAESAKSSKVEPPAIPVAKPCSDGI
IMLEDDSDDEEESHPVAETADEQKLKGFSASSPLEIDDDDDEPMSLSELSSSFQKCLNSN
EQAMDIGGTGNSGKQSGFLQLEPFNYEAARKQVVFGEDLEEDDSRPEDDKDPKPSKNAGA
KLGLGLDRVQKNSGTMELPQGKRRHAFPATGNRSATFR
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgatcagtctgattcgcagaagcctcagactttgcaatccctagccagtggt
tctctcggttcgtctctgtcgaggctctcgggctcttcccggggcattccagccgacaaa
gacttccacttctattacaacttcgacgaattcaaaatccctatacggagcatcgagcgg
caatctcagtcgatgctcgagaccattggctcgtccgccggagtgtggggcaaggaaatg
gctttccccgaggataccgacgacgcgtatgattggttggtcaatgtcaatgatgaaata
tttgagcggtttgatgtgtcgctggacgagttccagaggattcggaaggaggaggaggag
gaggagagtgggagggcagtggctttgacgacggcagacccggatgatgggtttcagttg
gtgtgtgggaagaaaaagaagatgccgagtcatggagatgatttgcatgattcgagtttg
gagtcgagtgtgaaggttgctaccaaggataggaaaactatgggggtgaagccgaaagtt
ccatttcatatacccactattcgtaggccgcaggatgagttcaatattttggttaataat
tcaaaccagcctttcgagcacgtttggttgcaaaggagtgaagatggttccaggtttata
catccactggagaagttatctgtattggactttgttgataagattgatgaagattttcaa
cctgcttatccaccatctttggagtctactcctttcaaattcattgaggaagtcaatgac
ttgaaagatctggcatctaaattgcggggggtgaatgaatttgcggttgatctggaacat
aatcagtatcgatcttttcaaggacttacctgtctgatgcaaatatctacaagaactgaa
gattttgttgtagatacattgaagctcagaattcatgtggggccctatctgagagaggtt
ttcaaggatccttccaagaaaaaggtgctgcatggagcagatcgagacattgtgtggctt
caacgggatttcgggatttatatttgcaacttatttgacactgggcaggcttcaagagta
ttgaaactagaaagaaatagtctggagtatctccttcatcactattgtggagttgcagct
aataaagaataccaaaatgcagactggagattaagacctcttcccgaggagatgctgaga
tatgctagggaagatacacattatttgctgtatatttatgatttgatgaagatgaaactg
tcctcgatgccccgtgaatctgaagaatctgactttcctttggtagaggtctacaagcgg
agttatgatgtatgcctgcatctttatgagaaggagctgttgactgaaagttcatatctt
tatgtatatggattgcagggttctggtttcaacgctcaacaacttgctgttgctgcaggt
ctctttgagtggcgagatattgttgctcgttcagaggatgaaagtactggttacatactg
ccaaacaaaacgcttctggaaatcgccaagcagatgcctgtcaacgtaagcaaattacgt
cgaatactgaaatcaaagcacccatatcttgagcgcaatcttgcttcaattgttgacatc
attaggcattctatgctaaatgcttgtgcctttgaagaggttgtagagcgcttgaaggaa
gcccgtacagaggcgttggcgacattggaagaaaatgcatcaactaatgaacaacgagag
actattgtacccgatacttcgaatttgaggcacacaattccgattatgaaggatggtgct
gttgataaatctgccaatgatcgaatctgttcaccctcttctcagtctaaagttgcaccc
ttggaacatggataccggccatttgaacctggaaaatgtattaaggtggaccattccctg
catcctgctatgaacgggagtagacaggtctctcaagtgggcccaacaacttcagagccg
agcagacacttgaacggcgataaatatccagtagcacaggttactggagtgaacatttcg
ttacaaaagaagagtaatcgaggtggtctgggggcgctactgggaaactcggccccgaag
agaaaattagataccgataagaaggataaggaagagaacaagttggataaaattaggtcc
tccgtggctctacccttccattcgttctcgggaacaagtgagcagttgaagcctgttaca
gaaccgaccatgactgcattaaaaactcaaaattctgaagcacctgctgccgagtcagcg
aaaagctcgaaggtagaacctcctgccataccagttgcaaagccctgctcggatgggatt
attatgttggaagacgattcagatgacgaagaagaatcccatcctgtagcagaaaccgct
gatgagcaaaagttgaaaggttttagtgctagttcacctcttgaaattgacgacgacgac
gacgagccaatgtctctgtctgaattgtcctctagctttcagaaatgtttgaattcaaat
gaacaagctatggacattggaggaactggcaattcaggaaaacaaagtggctttttgcag
ctcgaaccattcaactatgaagcagcaaggaaacaagtagtattcggagaagacctagag
gaagacgactcgagacctgaggatgacaaagacccaaagccatcaaagaacgctggggca
aagttaggtttaggtctagatagagttcaaaagaacagtggcaccatggaattaccacag
ggcaaacgacgccatgccttccccgcaactggaaatcgaagtgcaactttccgctaa
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