KEGG   Momordica charantia (bitter melon): 111022686
Entry
111022686         CDS       T05045                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03018  RNA degradation
mcha03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111022686
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111022686
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111022686
   03041 Spliceosome [BR:mcha03041]
    111022686
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111022686
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111022686
Spliceosome [BR:mcha03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111022686
 Complex C
  U2 snRNP components
    111022686
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 111022686
NCBI-ProteinID: XP_022155587
UniProt: A0A6J1E038
LinkDB
Position
Unknown
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttctcgtacttcaaggatttggtgggcagagaggtgacggtcgagttgaag
aacgacctagcaattagaggaactttgcactctgtcgatcagtatctcaacatcaaactt
gaaaacacgagggttgttgatcaagacaaataccctcatatgctttcagtgagaaactgt
tttatcaggggatcggtggtgagatatgttcaacttccgccagatggtgttgatattgag
ctcttgcatgatgctacaagacgcgaggctcggggtggctaa

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