Momordica charantia (bitter melon): 36165211
Help
Entry
36165211 CDS
T05045
Symbol
rpoB, C4D86_pgp074
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
36165211 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
36165211 (rpoB)
03400 DNA repair and recombination proteins [BR:
mcha03400
]
36165211 (rpoB)
Enzymes [BR:
mcha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
36165211 (rpoB)
Transcription machinery [BR:
mcha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
36165211 (rpoB)
DNA repair and recombination proteins [BR:
mcha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
36165211 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
36165211
NCBI-ProteinID:
YP_009456053
LinkDB
All DBs
AA seq
1070 aa
AA seq
DB search
MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFSCVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNLNRRLNLDIPENNTFLLPRDILAAADHLIGLKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLATSTP
LTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSPSRDEYYMVA
TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKILFSGN
GYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIKTHVTSHGPERITNEIPHLEARLLRNL
DKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIVSKILPREDMP
YLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLV
FSELYQASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcttgggggtggaaatgagagaatgtctacaatacctgggtttaatcagatacaattt
gaagggttttgtaggttcattgatcatggcttaacagaagaactttctaagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatataaattggta
gaaccattgataaaagaaagagatgctgtatatgaatcactcacatattcttctgaatta
tacgtatctgcaggattaatttggaaaacccgtagggatatgcaagaacaaacaattttt
attggaaacattcctctaatgaattccctgggaacttctatagtaaatggaatatacaga
attgtgatcagtcaaatattgcaaagccccggtatctattaccggtcagaattggaccat
aacggaatttcggtctataccggcaccataatatctgattggggaggaagattagaatta
gagattgatcgaaaagcaaggatatgggctcgtgtgagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcgaatctaagagaaattctcgagaatgtttgctac
cctgaaatttttttgtctttcctgaatgataaggagaaaaaaaaaattggatcaaaagaa
aatgccattttggagttttatcaacaattttcttgtgtaggcggagatccagtattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatctgaaccggagactgaatcttgatatacctgagaacaatacattt
ttgttaccgcgagatatattggcagctgcagatcatttgattggacttaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataaacggattcgttctgtagcggatctc
ttacaagatcaattcggattggctctagttcgtttagaaaatatggttagaggaactata
tgtggagcaattagacataaattgatacctactcctcagaatttggcaacttcaactcca
ttaacaaccacgtttgaatcttttttcggattacacccattatctcaagttttagatcga
actaatccattgacacaaatagttcatgggagaaaattgagttatttgggcccaggagga
ttgacagggcgaactgccagttttcggatacgagatatccatcctagtcattatggacgc
atttgcccaattgacacgtctgaaggaattaatgttggacttattggatcattagcaatt
catgcaaggattggtcattggggatctctagaaactccattttatgaaatttctgagaga
tcaaaaaaagtgcggatgctttatttatcaccaagtcgagatgaatactatatggtagcg
acaggaaattctttggcactgaatccaggtattcaggaagaacagattgttccagctcga
taccgtcaagaattcttgactattgaatgggaacaagttcatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctcattccttttatcgaacataatgatgcgaat
cgtgctttaatgagttctaatatgcaacgtcaagcagtcccgctttctcggtccgaaaag
tgcattgttggaactgggttggaacgccaagtggctcgagattcaggggttgccgctata
gccgaacacgggggaaagatcatttataccgatactgacaagatccttttttcgggcaat
gggtatactcgaagaattccattagttatgtatcaacgttctaacaaaaatacttgtatg
cagcaaaaatcccaggttcaccagggtaaatgcattaaaaaagggcaaattttagcggac
ggtgctgctacagttggtggcgaacttgctttgggaaaaaacgtattagtagcttatatg
ccatgggaaggttacaattctgaagatgcggtactaattagcgaacgtctggtatatgaa
gatatttatacttcttttcacatccggaaatatgaaattaaaactcatgtgacaagccac
ggacctgaaagaatcactaacgaaataccgcatctagaagcccgcttactccgtaattta
gacaaaaatggaattgtgatgctgggatcgtgggtggagacgggcgatattttagtaggt
aaattaacgcctcagatggcgaaagaatcatcgtatgccccggaagatagattattacga
gccatacttggcattcaggtatccacttcaaaagaaacctgtctaaaactacctataggc
ggtaggggtcgagttattgatgtgagatggatccagaaaaaagggggttcgagttataat
ccagaaatgattcgtgtatatatttcacagaaacgtgaaatcaaagtaggcgataaggta
gctggaagacatggaaataaaggtattgtttccaaaattttgcctagagaagatatgcct
tatttgcaaaatggaagacctgttgatatggttttcaatccattaggagtcccctcacga
atgaatgtaggacagatatttgagtgctcactcgggttagcggggagtttgctagataga
cattatcgaatagtaccttttgatgagagatatgaacaagaggcttctagaaaactagtc
ttttctgaattatatcaagccagtaagcaaacagcgagtccatgggtatttgaacccgag
tatccgggaaaaagcagaatatttgatggaagaacgggaaatccttttgaacaacctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacacgga
cgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggccaagcaa
ggtggacaacgggtgggagaaatggaggtttgggctctagagggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagctcggcaagaagtactt
ggtactacgatcattggaggaacaatacctaaacctgaggatactccagaatcttttcga
ttgctcgttcgagaactacgatctttggctttggaactgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa
DBGET
integrated database retrieval system