KEGG   Momordica charantia (bitter melon): 36165211
Entry
36165211          CDS       T05045                                 
Symbol
rpoB, C4D86_pgp074
Name
(RefSeq) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    36165211 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcha03021]
    36165211 (rpoB)
   03400 DNA repair and recombination proteins [BR:mcha03400]
    36165211 (rpoB)
Enzymes [BR:mcha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     36165211 (rpoB)
Transcription machinery [BR:mcha03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     36165211 (rpoB)
DNA repair and recombination proteins [BR:mcha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      36165211 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 36165211
NCBI-ProteinID: YP_009456053
LinkDB
AA seq 1070 aa
MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFSCVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNLNRRLNLDIPENNTFLLPRDILAAADHLIGLKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLATSTP
LTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSPSRDEYYMVA
TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKILFSGN
GYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIKTHVTSHGPERITNEIPHLEARLLRNL
DKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIVSKILPREDMP
YLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLV
FSELYQASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgcttgggggtggaaatgagagaatgtctacaatacctgggtttaatcagatacaattt
gaagggttttgtaggttcattgatcatggcttaacagaagaactttctaagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatataaattggta
gaaccattgataaaagaaagagatgctgtatatgaatcactcacatattcttctgaatta
tacgtatctgcaggattaatttggaaaacccgtagggatatgcaagaacaaacaattttt
attggaaacattcctctaatgaattccctgggaacttctatagtaaatggaatatacaga
attgtgatcagtcaaatattgcaaagccccggtatctattaccggtcagaattggaccat
aacggaatttcggtctataccggcaccataatatctgattggggaggaagattagaatta
gagattgatcgaaaagcaaggatatgggctcgtgtgagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcgaatctaagagaaattctcgagaatgtttgctac
cctgaaatttttttgtctttcctgaatgataaggagaaaaaaaaaattggatcaaaagaa
aatgccattttggagttttatcaacaattttcttgtgtaggcggagatccagtattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatctgaaccggagactgaatcttgatatacctgagaacaatacattt
ttgttaccgcgagatatattggcagctgcagatcatttgattggacttaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataaacggattcgttctgtagcggatctc
ttacaagatcaattcggattggctctagttcgtttagaaaatatggttagaggaactata
tgtggagcaattagacataaattgatacctactcctcagaatttggcaacttcaactcca
ttaacaaccacgtttgaatcttttttcggattacacccattatctcaagttttagatcga
actaatccattgacacaaatagttcatgggagaaaattgagttatttgggcccaggagga
ttgacagggcgaactgccagttttcggatacgagatatccatcctagtcattatggacgc
atttgcccaattgacacgtctgaaggaattaatgttggacttattggatcattagcaatt
catgcaaggattggtcattggggatctctagaaactccattttatgaaatttctgagaga
tcaaaaaaagtgcggatgctttatttatcaccaagtcgagatgaatactatatggtagcg
acaggaaattctttggcactgaatccaggtattcaggaagaacagattgttccagctcga
taccgtcaagaattcttgactattgaatgggaacaagttcatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctcattccttttatcgaacataatgatgcgaat
cgtgctttaatgagttctaatatgcaacgtcaagcagtcccgctttctcggtccgaaaag
tgcattgttggaactgggttggaacgccaagtggctcgagattcaggggttgccgctata
gccgaacacgggggaaagatcatttataccgatactgacaagatccttttttcgggcaat
gggtatactcgaagaattccattagttatgtatcaacgttctaacaaaaatacttgtatg
cagcaaaaatcccaggttcaccagggtaaatgcattaaaaaagggcaaattttagcggac
ggtgctgctacagttggtggcgaacttgctttgggaaaaaacgtattagtagcttatatg
ccatgggaaggttacaattctgaagatgcggtactaattagcgaacgtctggtatatgaa
gatatttatacttcttttcacatccggaaatatgaaattaaaactcatgtgacaagccac
ggacctgaaagaatcactaacgaaataccgcatctagaagcccgcttactccgtaattta
gacaaaaatggaattgtgatgctgggatcgtgggtggagacgggcgatattttagtaggt
aaattaacgcctcagatggcgaaagaatcatcgtatgccccggaagatagattattacga
gccatacttggcattcaggtatccacttcaaaagaaacctgtctaaaactacctataggc
ggtaggggtcgagttattgatgtgagatggatccagaaaaaagggggttcgagttataat
ccagaaatgattcgtgtatatatttcacagaaacgtgaaatcaaagtaggcgataaggta
gctggaagacatggaaataaaggtattgtttccaaaattttgcctagagaagatatgcct
tatttgcaaaatggaagacctgttgatatggttttcaatccattaggagtcccctcacga
atgaatgtaggacagatatttgagtgctcactcgggttagcggggagtttgctagataga
cattatcgaatagtaccttttgatgagagatatgaacaagaggcttctagaaaactagtc
ttttctgaattatatcaagccagtaagcaaacagcgagtccatgggtatttgaacccgag
tatccgggaaaaagcagaatatttgatggaagaacgggaaatccttttgaacaacctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacacgga
cgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggccaagcaa
ggtggacaacgggtgggagaaatggaggtttgggctctagagggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagctcggcaagaagtactt
ggtactacgatcattggaggaacaatacctaaacctgaggatactccagaatcttttcga
ttgctcgttcgagaactacgatctttggctttggaactgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa

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