Mesoplasma chauliocola: CK556_01165
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Entry
CK556_01165 CDS
T05062
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mchc
Mesoplasma chauliocola
Pathway
mchc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK556_01165 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchc03019
]
CK556_01165 (rnr)
03016 Transfer RNA biogenesis [BR:
mchc03016
]
CK556_01165 (rnr)
Enzymes [BR:
mchc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CK556_01165 (rnr)
Messenger RNA biogenesis [BR:
mchc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CK556_01165 (rnr)
Transfer RNA biogenesis [BR:
mchc03016
]
Prokaryotic type
tRNA degradation factors
CK556_01165 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
OB_RNR_1st
S1CSD-TOTE-2
Pox_RNA_pol
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ASZ08966
UniProt:
A0A249SMU1
LinkDB
All DBs
Position
251989..254103
Genome browser
AA seq
704 aa
AA seq
DB search
MNKEIILNILKENNDKLSINTLASKLRFFDLQELENILKTIAEENLIAFTIEKNIYLLGE
NFKLGSLRMNPKGFGFVNDVQNPEEEAYFVPPISLNGCFDSDEVIFKVLKEEERTKAEII
ELNLRVKEFLIGEIVKSNDGRFLDFIPSDQAFTGFRTRILNKKEFPIEEYQIVKAKIISI
KDRIMFVRLKKVIGDARKASDRILSIAEEFEIRTEFEKTTLKEAEKVNIPVDKEIDEISK
RMKNSLLNKMVVTIDGIDSKDLDDAICVEKLENNQFKLYVAIADVSHYVKPKTPLDNEAL
TRGNSTYLANRVLPMLPKILSDDLCSLNPNTKKFALACEMHFDENGRMLSKKVYETVMIS
KVRLNYNEVNKYIANKTWNHCDESRKMIDQAIELFKLIEQVKIKRGTITFDVREPKVIMD
ENSNVIEIKARQTGESEKMIEQFMVSANEAVAEIVNQMELPFIYRNHDKPDEEDLITWYQ
SLKSFGIDPKLTPAEMLDPLNINKTLKRISEQTKDPIEEELLNLSLLRYMAKAKYELENI
GHFGLSSPCYTHFTSPIRRYSDLMVHRFLKQYVINKNYDEKALEINEAFVKKASVIINET
ETTSVDCEREVVKACTVEFMSDKIGNIYEGTISVALKFGIFVQLNNMVEGLVHISNLEPN
IVYDETNKILIKHDNTFYRMGQKVKIKVISADIRKRKIDFILVK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaataatactaaatatacttaaagaaaataatgataaattatcgattaat
actctagcttcaaagctaagattttttgatttacaagaacttgaaaatattttaaaaaca
atagctgaagagaatttaatcgcttttactattgaaaaaaacatttacttgttaggagaa
aattttaaactaggtagtttaagaatgaatccaaaaggttttggattcgttaatgacgtt
caaaaccctgaagaagaagcatactttgtacctccaatcagtttaaacggatgctttgat
agtgacgaagttatttttaaagttcttaaagaagaagaaagaacaaaagcagaaatcatt
gaattaaatttaagagttaaagaatttttaattggtgaaattgtcaaaagcaatgatgga
aggtttttagattttattccaagtgatcaagcttttacaggctttagaacaagaatttta
aataaaaaagaatttccaattgaagagtaccaaatagttaaagcaaaaataatttcaatt
aaagatagaataatgtttgttagattaaaaaaagtaattggagatgctagaaaagcaagc
gacagaattttatcaattgcagaagaatttgaaattagaactgaatttgaaaaaacaact
ttaaaagaagcagaaaaagttaatatccctgttgataaagaaattgatgaaattagtaaa
agaatgaaaaattctttacttaataaaatggttgtaactattgatgggatagattctaaa
gatttagatgatgcaatttgtgtggaaaaattagaaaataaccaatttaaactatatgtc
gcaattgctgatgttagtcattatgttaaaccaaaaacacctttagataatgaagcttta
acaagaggaaactcaacatacttagcgaacagagtattaccaatgcttccaaaaatttta
agtgatgatttatgttcgttaaatccaaatactaaaaaatttgcattagcttgtgaaatg
cattttgacgaaaatggaagaatgctaagtaaaaaagtttacgagactgttatgatttct
aaagtaagacttaactataatgaagttaacaaatacattgcaaataaaacttgaaatcat
tgtgatgaatcaagaaaaatgattgatcaggctattgaattatttaaattaattgaacaa
gttaagattaaacgtggaacaattacttttgatgttcgtgaaccaaaagtaataatggat
gaaaatagtaatgttattgaaattaaggcaagacaaactggggaatcagagaaaatgatt
gagcaatttatggttagtgcaaatgaagcagtggctgaaattgttaatcaaatggaatta
ccttttatttatagaaatcatgacaaaccagacgaagaagatttgattacttgatatcaa
tcacttaaatcatttggtatagatccaaaattaactcctgctgaaatgttagatccgctt
aatattaataaaactttgaagcgtatatcagagcaaactaaagatccaattgaggaagaa
ctattaaatttatctttactaagatatatggcaaaagctaaatatgaattagaaaatatc
ggacactttggattatcaagtccttgttatactcattttacttcaccaattagaagatat
agtgatttaatggttcacagatttttaaaacagtatgtaataaataaaaattacgatgaa
aaagctttagaaattaatgaagcatttgttaaaaaagcgtcagttattattaatgaaaca
gaaacaacaagtgttgattgtgagcgtgaagttgttaaagcatgtacggttgaatttatg
agtgacaaaataggcaacatctatgaaggaacaatatctgttgcgcttaagtttggaatt
tttgttcaacttaataatatggttgaggggttggttcacatttcaaatctcgagccaaat
attgtttatgatgaaacaaataaaattttaatcaagcatgataatacattttatcgaatg
ggacaaaaagttaaaataaaagtaattagtgctgacattagaaaaaggaaaattgacttt
attttagttaagtaa
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