Mycobacteroides chelonae: BB28_06900
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Entry
BB28_06900 CDS
T04665
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mche
Mycobacteroides chelonae
Pathway
mche03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mche00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB28_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mche03019
]
BB28_06900
03009 Ribosome biogenesis [BR:
mche03009
]
BB28_06900
Enzymes [BR:
mche01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB28_06900
Messenger RNA biogenesis [BR:
mche03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB28_06900
Ribosome biogenesis [BR:
mche03009
]
Prokaryotic type
rRNA helicases
BB28_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
P-loop_SecA
adh_short
Surface-like_ins_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANA97525
LinkDB
All DBs
Position
1358603..1360399
Genome browser
AA seq
598 aa
AA seq
DB search
MTSTDIPTPDTGESSAPRADDAVTFADLQIAPEVLRAVSDVGYETPSAIQAATIPPLLAG
SDVVGLAQTGTGKTAAFAIPILSKIDLTSKNTQALVLAPTRELALQVAEAFGRYGAHMPK
LNVLPIYGGQSYVVQLSGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLT
MGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKVEAKTSTAENITQR
FIQVAGPRKMDALTRILEVETFEAMIVFVRTKQATEEVAEKLKARGFAAAAINGDINQSQ
RERTINALKSGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG
TAVLFVSPRERHLLKAIEKATGARLAEEPLPSVDDVNAQRVTKFRDAITAALAAPEIELF
RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLKPDPPRDPRHERGERPERGPREPRTQ
TPGLATYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTL
KALENTRISGVLIELRPAGGPDGARPARKFADRKRPDHKHTDHKRSEAKRPKRSPKKP
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacagatatccccacgcccgacaccggcgaatcgagtgcaccacgcgcggat
gacgccgtcaccttcgcggacctacagatcgcccccgaggtgctgcgtgcggtgtccgac
gtggggtacgaaacaccgtcggcgattcaggccgccaccatcccgccgttgttggcaggt
tcggatgtggtgggcctggcgcagaccggtacggggaagacggcggcgttcgccatcccc
atcctctctaaaatcgatctgacctcgaagaacacccaggccttggtgctggcgcccaca
cgtgagctggcgttgcaggtcgccgaggcgttcggccggtacggcgcccatatgcccaag
ctgaatgtgctgccgatctatggcggtcagtcgtatgtggtgcagctgtcgggcctcaag
cggggggctcaggttgtggtcgggacaccggggcgtgtcatcgatcacctcgagcgcggc
acgttggatctgtcgcatctggactatctggtgctggacgaggccgacgagatgctcacc
atgggcttcgccgaggatgtcgaacgcatcctggccgatactcccgagtacaagcaggtg
gcgctgttctcggccaccatgcccaccaccatccgccggctcaccaagaagtacctgcac
gacccggtggagatcaaggtcgaggcaaagacgtccacggccgagaacatcactcagcgc
ttcatccaggtggccggcccccgcaagatggacgcgctcacccggatcctcgaggtcgag
acgttcgaggcgatgatcgtgttcgtcaggaccaaacaggccaccgaggaggtggccgaa
aagctcaaggcacgcggattcgccgcggcggcgatcaacggcgatatcaaccagtcgcaa
cgtgagcggaccatcaacgcgctcaagagcgggaccatcgacatcctcgtggccaccgat
gttgccgcccgcggtctggacgtcgaacgcatctcccacgtcctcaactacgacattccg
cacgacacggagtcgtatgtgcaccgcatcggccgcacgggtcgcgcgggccgctcgggt
accgcggtgttgttcgtctctccgcgtgagcggcacctactcaaggccatcgagaaggcc
accggtgcccggcttgccgaggagccgctgccgtcggtcgacgatgtcaatgcccagcga
gtgacgaagttccgcgatgccatcaccgctgcgctcgcggcaccggaaatcgaactgttc
cgccggctcgtcgaggactacgaacgcgataacaatgtgccggtggccgatatcgcggca
gcgctggcggtactgtcgcgcgacggcgagcagttcctgctgaagcccgatccgcctcgc
gatcctcgccacgagcgtggggaacgccccgagcgcgggccccgcgaaccgcgcacgcag
actcccggcttggcgacgtatcgcattgctgtcggcaagcggcacaaggtgatgccgggc
gccatcgtgggcgcgatcgcgaacgaaggcggtctgcatcgcagcgacttcgggcacatc
accatccgcccggatcactcacttgtggagctgcccgccaagctgtcgcccaagacattg
aaagcgctggagaacacccggatctccggtgtactcatcgaactgcgccccgcgggtggg
cccgatggtgcgcgcccggcgcgcaagttcgcggatcgcaagcgcccagaccacaagcac
acggaccacaaacggtcggaggcgaagcgtcccaagcggtcccccaagaaaccatga
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