Mycobacteroides chelonae: BB28_15610
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Entry
BB28_15610 CDS
T04665
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mche
Mycobacteroides chelonae
Pathway
mche03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mche00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB28_15610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mche03019
]
BB28_15610
Messenger RNA biogenesis [BR:
mche03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BB28_15610
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ANA99057
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Position
complement(3098391..3100082)
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AA seq
563 aa
AA seq
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MPITPPEDLRAPGPLADGALRVTALGGISEIGRNMTVFELRGRLLIIDCGVLFPGHDEPG
VDLILPDIRHIEDRLDDVEALVLTHAHEDHIGAIPFLLKMRPDIPVVGSAFTLALVEAKC
REHRITPRFIKVAEGERSTHGAFECEYFAVNHSIPDALAIAVHTEAGTILHTGDIKLDPL
PPDRRPTDLPGLSGLGDRGVDLFLVDSTNSEVPGVGPSESEIAPTLNRLIETARGRVIIA
CFASNVARVQQIIDASVAHGRRVALVGRSMVRNMGIARDLGFLDVEDRDLINVEAANELA
PQRVVMVTTGTQGEPMAALSRMARGDHRQITLTPDDLVILSSSLVPGNEEAVYGIIDSLA
KVGTRVVTNTHARVHVSGHAYAGELLYLYNAVRPRNVMPVHGTWRHLRANAELAVKTGVD
EDRIVLAENGVSVDLHNERARIAGRIPVGKMFVHGLVDGDVSDATVGERLVLSNGGFIAV
TVVVRSNGRLVGRPELFSRGFSDDAKALDPVTEMVITELNSLAEQSVTDTGRIAQSVRRV
VGKWVGETYRRQPMIVPTVLTVD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtgccgataacgccacccgaagatctgcgtgcgcccggtccgctcgccgatggcgcattg
cgcgtcaccgcgctcggcggtatcagcgagatcggccgcaatatgacggttttcgagctg
cgtgggcgcctcctcatcatcgactgtggagtgcttttccccggccatgacgagcccggc
gtggacctgatccttccggacatccggcatatcgaagatcgtctcgatgatgtcgaggcg
ctggtcttgacccatgcgcacgaggatcacatcggagccatccctttcctgctcaagatg
cgccccgatatcccagtggtgggttcggctttcacgctcgcgttggtcgaggccaagtgc
cgcgagcaccgcatcacccctcggtttatcaaggtggcggagggcgagcggtccactcac
ggcgcctttgaatgcgagtacttcgcggtcaaccactcgattcccgacgcactcgccatc
gccgtacacaccgaggccgggaccatcttgcacaccggcgatatcaagcttgatccgctg
cctccggaccgccgtcccaccgacctgcccgggctatccggattgggtgatcggggtgtc
gacctgttcctcgtcgactccacgaactccgaggtgccgggagtaggtccatcggagagc
gagatcgctcccaccctgaaccggctcatcgagaccgcgcgcggccgggtgatcattgcg
tgtttcgccagcaatgtggcacgggtgcaacagatcatcgatgcctcggtggcgcacgga
cgccgtgtcgcgctcgtgggccgatcgatggtgcgcaacatgggtatcgcccgcgatctg
ggctttctcgacgtcgaggaccgcgacctgattaatgtagaggccgcgaacgagcttgca
ccgcaacgcgttgtgatggttaccaccggcacacagggtgagccgatggctgcgctctca
cgtatggctcgtggcgatcatcgccaaatcaccctgactcctgacgatttggtcatcttg
tcgtcatcgctggtgccgggcaatgaggaagccgtctacggcatcattgactcgcttgcg
aaggtgggcactcgggttgtgacaaacacccatgcgcgggtgcatgtttcgggacatgcc
tatgccggggagctgctctacctctacaacgcggtacgcccgcgcaatgtcatgccggtg
cacggcacctggcggcatctgcgtgccaatgccgaacttgcggtcaagaccggtgtcgat
gaagaccggatcgtgttggcggaaaacggcgtaagcgtcgacctgcacaacgagcgggcg
cgcattgcgggacggattccggtgggcaagatgtttgtccacggcctggtcgatggtgac
gtgtcagatgccaccgtcggcgagcgcctggttttgagcaatggcggattcatcgcggtc
actgtcgtggtgcgtagcaacgggcgcctggtcggcaggccggagctgttctcgcgcgga
ttctccgatgacgccaaggccctggacccggtgaccgagatggtgatcaccgagttgaat
tcacttgccgaacagtcggtcaccgataccggccgcatcgcgcagtcggtgcggcgtgtg
gttggcaaatgggtcggcgagacctaccgccgccagcccatgatcgtaccgaccgtgttg
acggtcgactaa
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