Mycobacterium intracellulare subsp. chimaera: AN480_18395
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Entry
AN480_18395 CDS
T04926
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mchi
Mycobacterium intracellulare subsp. chimaera
Pathway
mchi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AN480_18395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchi03019
]
AN480_18395
Messenger RNA biogenesis [BR:
mchi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AN480_18395
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AOS92980
UniProt:
A0A220YFM8
LinkDB
All DBs
Position
complement(4102944..4104620)
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AA seq
558 aa
AA seq
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MDVDLAPPGPLATGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
LPDLRHIEDRLDDIEALVLTHAHEDHIGGIPFLLKLRPDIPVVGSRFTLALVAAKCREHR
LKPVFVEVAEGQKSTHGVFECQYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDG
RPTDLPGMSRLGDAGVDLFLCDSTNAEHPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADSDVIDIGAAEMMPPERV
VLITTGTQGEPMSALSRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGA
RVVTNAQARVHVSGHAYAGELLFLYNGIRPRHVMPVHGTWRMLRANSKLAIRTGVPEESI
LLAENGVSVDLVAGKAAIAGAVPVGKMFVDGLINGDVGDITLGERLILSSGFVAVTVVVA
RGTGRPVVPPHLHSRGFSEDPKALEPAVRRVEAELEALAAENITDPSRIAQGVRRTVGKW
VGETYRRQPMIVPTVIEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtagacctcgccccgccaggcccgttggccactggagggttgcgggtcaccgcg
ctgggcggcatcagcgaaatcggccgcaatatgacggttttcgaacacctgggtcggttg
ttgatcatcgactgcggggtgatgttccccacccacgacgagcccggggtcgacctgatc
ctcccggacctgcgccacatcgaagaccggctcgacgacatcgaggcgctggtgctcacc
cacgcccacgaggaccacatcggcggcattccgtttttgctcaagctgcgacccgacatc
ccggtcgtcggttcgagattcacgctcgcgctggtcgccgcgaagtgccgcgagcaccgc
ctcaagccggtgttcgtcgaggtggccgagggccagaagagcacccacggggtgttcgaa
tgccaatacttcgccgtcaaccactccatccccgacgcgctggcgatcgccgtgcacacc
ggcgcgggaacggttctgcacaccggcgacatcaagctcgaccagcttccgctggacggc
cggccgaccgacctgcccggcatgtcccgcctcggtgacgccggggtggaccttttcctg
tgcgattcgaccaacgccgagcaccccggcgtcgggccgtcggaaagcgaggtcggtccg
acgctgcatcggctgatccgcggcgccgagggccgggtcatcgtggcgtgcttcgcctcc
aacgtggaccgggtccagcaaatcatcgacgccgcagtggcattgggccgacgggtgtca
ttcgtcggccgctccatggtgcgcaacatgggcatcgcccgagagctcggcttcctgcgg
gtggcggattccgacgtgatcgacatcggcgccgccgagatgatgccgcccgagcgggtc
gtgctgatcaccaccggcacccagggcgaaccgatgtcggcgttgtcgcggatgtcgcgc
ggcgagcaccgcagcatcacgctgaccgcgggtgacctcgtggtgctggcgtcgtcgctg
atccccggcaacgaggaggccgtctacggcgtcatcgacgagctcgccaagatcggagcc
cgcgtcgtcaccaacgcccaagcgcgggtccacgtttcgggccacgcctacgccggcgaa
ctgttgttcctgtacaacgggatccggccgcgccacgtcatgcccgtgcacgggacgtgg
cggatgctgcgcgccaactccaagctggcgatccgcaccggcgtgccggaggagtcgatc
ctgctcgccgagaacggggtcagcgtcgacctggtcgcgggcaaggccgcgatcgccggg
gcggtgcccgtcggcaagatgttcgtcgacggcctgatcaacggcgacgtcggcgacatc
acgctgggcgaaaggctcatcctctcatcgggtttcgtggcggtgaccgtcgtggtcgcc
cgcggcaccggacgccccgtggtcccaccgcacctgcattcgcgcggcttctccgaggac
cccaaggcgctcgagcccgccgtgcgcagggtcgaggcggagctggaagcgctggcggcc
gagaacatcaccgacccgagccgcatcgcccagggtgtgcggcgcaccgtcggcaagtgg
gtcggcgaaacctaccgccgccagccgatgatcgtgccgaccgtcatcgaggtctag
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