Mycobacterium intracellulare subsp. chimaera: AN480_22890
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Entry
AN480_22890 CDS
T04926
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mchi
Mycobacterium intracellulare subsp. chimaera
Pathway
mchi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mchi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AN480_22890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mchi03021
]
AN480_22890
03400 DNA repair and recombination proteins [BR:
mchi03400
]
AN480_22890
Enzymes [BR:
mchi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AN480_22890
Transcription machinery [BR:
mchi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AN480_22890
DNA repair and recombination proteins [BR:
mchi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AN480_22890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
APD84363
UniProt:
A0A220YI86
LinkDB
All DBs
Position
complement(5025279..5029229)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL
YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDGDKGEFK
AAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGAGGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGKVVVARGEDLGDPEIEALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEEGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDNDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcggctggggtacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gaggagatgcgccacaacgagctctcgacgctcgaggccgaaatgatggtggagcgcaag
gccatcgaggaccagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctggaggccgagggcgcgaaagcggatgcaaggcggaaggttcgtgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgag
gagatctggacgaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctgatcgaccgcttcggtgagtacttcaccggcgccatgggtgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagatcctgcgcgacgtc
atccggaacggcaaggggcagaagaaacttcgcgccctgaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtccagctcgacggtggccggttcgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgttgcaggagtccgtggacgcg
ttgttcgacaacggccgtcgcggccgcccggtcaccgggccgggtaaccgcccgctgaag
tcgctgtccgacctgctcaagggtaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgcagcgtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccggctgggtatccaggccttcgagccgatgctggtggaaggcaag
gcaatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgcctttgagcgccgaggcgcaggccgaggcccgcatcctgatgctg
tccagcaacaacatcctgtcgcccgcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccgggctgtactacctgaccaccgaggtcgacggggacaagggcgaattcaag
gcggccgccaaggacgagcccgaggtgggcgtgtactcgtcgccggccgaggcgatcatg
gcgtccgaccgtggcgtgctgtcggtgcgggccaagatcaaggtgcggctgacccagctg
cgcccgcccgccgagatcgaggccgagctgttcggcgcgggcggctggcagccgggggac
gcctggatggccgagaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggt
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtgctcgtgccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggcggaaaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgtgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggcgcccgaaagggcttg
gcggacaccgcgttgcgtaccgccgactccgggtacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtccgggagcacgactgcgagaccgagcggggcatcgtcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgcgacccgtacatcgaaacctcggcg
tacgcacggactttgggcaccgacgcggtcgacgaggccggcaaggtcgtcgtcgcgcgc
ggcgaggacctgggtgacccggagatcgaggccctgctggcggccggcatcacgcaggtc
aaggtgcgctcggtgctgacgtgcaccaccggcaccggggtgtgcgcgacctgttacggg
cggtccatggccaccggaaagctggtcgacatcggcgaggccgtcggtatcgtcgccgcc
cagtccatcggtgagcccggtacccagctgaccatgcggacgttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgggtccaggagctgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcaccgggcgggtccgcctcgaggagggcgagcgt
ttctacaagatcaccatcgttcccgacgacgggagcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctgcgcgtgttcaagcacgaagacggttccgagcgcgtgctctcc
gacaacgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgattcgggttcgacggagttcctgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggttccgctggacgactacggctacagcgactaccggtag
DBGET
integrated database retrieval system
