Micromonospora chalcea: PVK74_01940
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Entry
PVK74_01940 CDS
T08919
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mchl
Micromonospora chalcea
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mchl03032
]
PVK74_01940
03400 DNA repair and recombination proteins [BR:
mchl03400
]
PVK74_01940
Enzymes [BR:
mchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PVK74_01940
DNA replication proteins [BR:
mchl03032
]
Prokaryotic type
DNA Topoisomerases
PVK74_01940
DNA repair and recombination proteins [BR:
mchl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PVK74_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WDQ00580
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All DBs
Position
422589..423578
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AA seq
329 aa
AA seq
DB search
MRLRRSDPGRPGYARRRRGKGWLFLDPAGEPVRDAGELARLRELVIPPAWQDVWISPYPN
GHIQATGIDAAGRKQYLYHPRWRRKRDEAKFDHVLEVAHRLPALRDRVTQDLALRGLRRE
RVLATVARLLDMGAFRVGSDQYATGDDPTFGVATLRPEHTRSRGGCVVFEFPAKGGIEQV
RRIEDAELCRVLLNLRRRRRAQERLFGYWDGRSWRDVRSDEVNDYLRDASGGEMTAKDFR
TWHATVLAAAELANVGPQRSATARRRAVAGVMRSVAELLGNTPTVARASYVDPRVVDLYH
DGVLAPVQPEMPREAVEKSVLALLEEEAG
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgcggttgcggcgtagcgatccgggccggccggggtacgcgcgccggcgacgcggcaag
ggctggctgttcctcgacccggccggcgagccggtgcgcgacgccggggagctggcccgg
ctgcgcgagctggtcatcccgcccgcctggcaggacgtgtggatctcgccgtacccgaac
ggccacatccaggccaccggcatcgacgcggcgggccgcaagcagtacctctaccacccg
cgctggcggcgcaagcgcgacgaggcgaagttcgaccacgtgctggaggtggcccaccgg
ctgcccgcgctacgggaccgggtcacgcaggacctggcgctgcgcggcctgcgccgggag
cgggtgctcgccaccgtcgcccggctgctcgacatgggcgccttccgggtcggcagcgac
cagtacgccaccggcgacgacccgaccttcggggtggccacgctgcgccccgagcacacc
cgctcccggggcgggtgcgtggtcttcgagttccccgccaagggcggcatcgagcaggtc
cgccggatcgaggacgcggagctgtgccgggtgctgctcaacctgcgccggcggcggcgg
gcccaggagcggctgttcggctactgggacggccggtcctggcgcgacgtgcgcagcgac
gaggtgaacgactacctgcgcgacgccagcggcggggagatgaccgcgaaggacttccgt
acctggcacgccaccgtgctggcggcggccgagctggcgaacgtgggcccgcagcgctcc
gccaccgcccgcaggcgggcggtggccggggtgatgcggtcggtggccgagttgctcggc
aacaccccgacggtggcgcgggcctcctacgtggacccgcgggtggtcgacctctaccac
gacggggtgctggcgccggtgcagccggagatgccgcgcgaggcggtggagaagtcggtg
ctggcgctgctggaggaggaggccggctga
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