Micromonospora chalcea: PVK74_07175
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Entry
PVK74_07175 CDS
T08919
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mchl
Micromonospora chalcea
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mchl03016
]
PVK74_07175
Enzymes [BR:
mchl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PVK74_07175
Transfer RNA biogenesis [BR:
mchl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PVK74_07175
Prokaryotic type
tRNA splicing ligases
PVK74_07175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WDQ01564
LinkDB
All DBs
Position
complement(1528078..1529277)
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AA seq
399 aa
AA seq
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MGFTPLAGTRAPVRVWTDPYTIEAQAARQLRNIGALPWVQGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLAPLRSAIEAAIPVGFAMRDDAVDPR
RVRGLEQAGWDEFWRRFATLDRKVAQLETRAQRQLGTLGGGNHFIEVCLEQGGPDDGRVW
LMLHSGSRNIGKELAERHMSVARGLPHNTDLPDRDLAVFLAGTPEMEAYRRDLWWAQEYA
RRNRAVMLALLSQVVREAFPHVRYDEPISCHHNYVAEESYDGVDVLVTRKGAIRAGKGDL
GIIPGSMGTGSYIVRGKGNVDAYCSASHGAGRRMSRGQAKRTYSTADLAAQTAGVECRKD
AGVVDEIPGAYKDITEVMAQQEDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaccccgctggccggtacccgggcgccggtccgggtctggaccgacccgtac
acgatcgaggcgcaggcggcccggcagctgcgcaacatcggcgcgctgccgtgggtgcag
ggcgtcgcggtgatgccggacgtgcacttcggcaagggcgccactgtcggctcggtgatc
gcgatgcggcaggccgtgtcgccggccgcggtcggcgtggacatcggctgcggcatgtcc
gcggtgcggacctcgctgaccgccgccgacctgcccgacgacctcgcgccgctgcgttcg
gcaatcgaggcggcgatcccggtcggcttcgcgatgcgcgacgacgctgtcgatccgcgg
cgggtccggggcctggagcaggccggctgggacgagttctggcggcggttcgccacgctg
gaccggaaggtcgcccagctcgagacgcgggcgcagcggcagctcggcacgctcggcggc
ggcaaccacttcatcgaggtctgcctggagcagggtggcccggacgacggccgggtctgg
ctgatgctgcactccggttcccgcaacatcggcaaggaactggccgagcggcacatgtcg
gtggcgcgcgggctgccgcacaacaccgacctgccggaccgggacctcgcggtgttcctc
gccggcacgccggagatggaggcgtaccggcgggacctgtggtgggcgcaggagtacgcc
cggcgtaaccgggcggtcatgctcgcgctgctgagccaggtggtccgggaggcgttcccg
cacgtgcgctacgacgagccgatctcctgccaccacaactacgtggcggaggagagctac
gacggggtggacgtgctggtgacccgcaagggagcgatccgggccggtaagggggacctg
ggcatcatccccggctcgatgggcaccgggtcgtacatcgtgcgcggcaagggcaacgtc
gacgcgtactgctcggcgtcgcacggggccgggcggcggatgtcgcgggggcaggcgaag
cgcacgtacagcacggcggatctggccgcgcagaccgccggtgtggagtgccgtaaggat
gccggtgtggtggacgagattcccggcgcgtacaaggacatcaccgaggtgatggcccag
caggaggacctggtcgaggtggtcgcccacctcaagcaggtcgtctgcgtgaagggctga
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