Micromonospora chalcea: PVK74_07425
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Entry
PVK74_07425 CDS
T08919
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mchl
Micromonospora chalcea
Pathway
mchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVK74_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchl03019
]
PVK74_07425
03009 Ribosome biogenesis [BR:
mchl03009
]
PVK74_07425
Enzymes [BR:
mchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVK74_07425
Messenger RNA biogenesis [BR:
mchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVK74_07425
Ribosome biogenesis [BR:
mchl03009
]
Prokaryotic type
rRNA helicases
PVK74_07425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
WDQ01611
LinkDB
All DBs
Position
1593486..1595243
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AA seq
585 aa
AA seq
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MTAAPTPTDPAIPADAEDATAFADLGLRTELLGALAALGYEEPTPIQREAIPPLLAGQDL
LGQAATGTGKTAAFALPLLQRMPVGRPDGDPVSLVLVPTRELAVQVSEAFHRYGKDLGAR
VLPIYGGQPIGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALATVVLDEADEMLDMG
FAEDIEAILEHAPAGRQTVLFSATMPARIDGLARQHLTDPVRIQIERERPVAGEAPRVRQ
SAYIVARGHKPAALGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQE
QRDRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGRE
GVAITLAEPREHRMLKTIERVTGQRITIDKIPTVADMRTRRLELTQGALRESLLEDDLDP
YRVIVESLTDEFDLVEVALAAVKLAHEATSPGSDDEEEIPQVPVRGPREGRPETGGRGER
RGPGRPRTGGTTQVFIGLGRRAGVRPQDLVGAITGETRISGRDIGSIEIADRFSLVEVPQ
AVADEIISGLRGTTIKGRKATVRRDRDGDGSGERRDRGYERRDRR
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcaccgaccccgaccgaccccgccattcccgccgacgccgaggacgccacc
gccttcgcggatctcgggctgcgcaccgagttgctgggcgcgctggccgcgctcggctac
gaggaacccaccccgatccagcgggaggcgatccccccgctgctggccgggcaggatctg
ctgggacaggcggcgaccggtacgggcaagaccgccgcgttcgcgctgccgctgctgcag
cggatgccggtgggacggccggacggcgacccggtgtcgctggtgctggtgccgacccgt
gagctggccgtgcaggtctccgaggcgttccaccgctacggcaaggacctgggcgcccgg
gtgctgccgatctacggcgggcagccgatcggccggcagctgcgcgcgctcgaccacggg
gtcgacgtggtggtcgcgacgccgggccgggccctggaccacatcgcccggggcacgctg
cggctgggcgcgctggccacggtggtgctggacgaggcggacgagatgctcgacatgggc
ttcgccgaggacatcgaggcgatcctggagcacgcgccggccggccggcagacggtgctg
ttctcggccaccatgccggctcgcatcgacgggctggcccggcagcacctgaccgatccg
gtccggatccagatcgagcgggagcggccggtcgccggggaggcgccccgggtacggcag
agcgcgtacatcgtggcccgggggcacaagccggccgcgctgggccgggtgctggacgtg
gagtcgccgaccgcggcgatcgtgttctgccgcagccgcgaggaggtcgaccggctcacc
gagacgatgaacggccggggctaccgggccgaggcgctgcacggcgggatgagccaggag
cagcgggaccgggtgatgggccggctgcgcgccggtacggcggacctgctggtcgccacc
gacgtggccgcccgggggctggacgtcgagcagctcacccacgtggtcaactacgacgtc
ccgtcggcgccggagtcgtacgtgcaccggatcggccgggtcggccgggccgggcgggag
ggtgtggcgatcacgctcgccgagccgcgcgagcaccggatgctcaagaccatcgagcgg
gtcaccggccagcggatcaccatcgacaagatccccacggtggcggacatgcgcacccgg
cggctggagctgacccagggcgcgctgcgggagagcctgctggaggacgacctcgacccg
taccgggtgatcgtcgagtcgctgaccgacgagttcgacctggtggaggtggcgctggcg
gcggtgaagctggcgcacgaggcgacgtcgcccggctcggacgacgaggaggagatcccg
caggttccggtccggggcccgcgcgagggccgcccggagaccggtgggcggggcgagcgc
cggggcccgggccgtccgcgtaccggggggaccacccaggtcttcatcgggctgggccga
cgcgccggggtacggccgcaggacctggtcggcgcgatcaccggggagacccggatcagt
ggccgggacatcggctcgatcgagatcgccgaccggttctcgctggtcgaggtgccgcag
gcggtggccgacgagatcatctcagggctgcggggcaccacgatcaagggccgtaaggcg
accgtacgccgggaccgggacggcgacggttccggtgagcgccgcgaccggggttacgag
cggcgcgaccggcgctga
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