Micromonospora chalcea: PVK74_25685
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Entry
PVK74_25685 CDS
T08919
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mchl
Micromonospora chalcea
Pathway
mchl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVK74_25685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mchl03400
]
PVK74_25685 (mfd)
Enzymes [BR:
mchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVK74_25685 (mfd)
DNA repair and recombination proteins [BR:
mchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PVK74_25685 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
SCO3859_C
UB2H
DUF8411
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDP99212
LinkDB
All DBs
Position
5673994..5677641
Genome browser
AA seq
1215 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVASDEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PEAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVAQMWA
PPCRELLLTPDVRERAAALAAEHPELAEILDKLAEGIPVEGMESLAPVLIGADALELLVD
CMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKTLAEVR
TAARALRQPWWTLAPFGLVEADAAPARQPWEDAPAEVDVTPDDAIAVSLAAQPAPLYHGE
TARVVEDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPTAPAPGELLVS
CGCLTAGFVDEASKFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHNFAPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPVSIRQLSRFQTPKETEQTLEMVAAGTVDIVIGTHRLLQASTRFKQL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIEKTARKLRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGESTEEETEVKVDLPIDAHLPHDYVGVERLRLEMYR
KLAEARDAERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQMRLKRYHPDSVYKQALDQVSVPRPSTRRIGGEPLRDQALLEWCEQLLADVL
GKPEELARAVPAGAR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcgcaggtcgacgggctcgacctcaccgcccccgccgcgctg
cgcccgttcgcggtggcagcggtcgcctccgacgagccggccggcggcgcgggccgtccc
gtgctcgccgtcaccgccaccacccgggaggccgacgacctggcctccgcgctgggcagc
ctgctgccgccggagcaggtggcggtcttcccgtcctgggagacgctgccgcacgagcgc
ctgtcgccccgctccgacacggtcgggcggcgcctcgccgtgctgcgccgcctcgcccac
ccggaggccgccgacgcgcacggccgcaccgggccgctgcgggtcgtcgtcgcgccggtc
cggtcattgctccagccgcagctcaagggcctcggcgacctggaacccgtccagctcgcc
gccggtgacgaggccgacctggaagaggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagttcgcggtacgcggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcacgttcgcggtcgccgaccagcgcaccatcgagggcgtcgcgcagatgtgggcg
ccgccgtgccgcgagctgctgctcaccccggacgtgcgggagcgggccgccgcgctcgcc
gccgagcaccccgagctggccgagatcctggacaagctcgccgagggcatcccggtggag
ggcatggagtccctcgcgccggtgctgatcggcgccgacgcgctggaactgctcgtcgac
tgcatgccggccggcacccacgtactcctctgcgaccccgagcgcatccgcacccgcgcg
cacgacctggtgcgtacctcggaggagttcctccaggccagctgggccgcagccgccgtc
ggcggccaggccccggtcgacctcggcgccgccgccttcaagaccctggccgaggtacgc
acggcagcccgcgccctgcgccagccctggtggacgctcgcgccgttcggcctggtggag
gcggacgcggcaccggcccggcagccctgggaggacgcgccggccgaggtcgacgtcacc
cccgacgacgccatcgcggtgagcctggccgcccagccggccccgctctaccacggcgag
acggcccgggtggtcgaggacctgaagcgctgggccggcgagggctggtcgatcgcgctg
gtcttcgaggggcacggccccgcccagcgggccgtcgaggtgctccgtgacgccggtctc
ggcgcccggctcaccgaggaggtgcccaccgcgcccgcaccgggcgagctgctcgtgtcg
tgcggctgcctgaccgccggcttcgtcgacgaggcgtcgaagttcgtgctgctcaccggc
aacgacgtcaccggcggccggggcacctccacccgcgacatgcgcaagatgcccagccgg
cggcgcaacaccatcgacccgctggagctgaaggccggcgacttcgtggtgcacgagcag
cacggcatcggccggtacgtcgagctggtgcagcgcacggtcaacggcgccagccgcgaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctcttcgtc
ccgaccgaccagctcgatcagctctcccgctacgtcggcggcgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcgcgggcgcgcaaggcggtccgcgag
atcgccgcgcagctcatccagctctacgccgcgcgcaaggcgtccaaggggcacaacttc
gcccccgacaccccgtggcagcgggagctggaggacgccttcccctggcaggagacgccg
gaccagctggccgccatcgaggaggtcaagcgggacatggaacaaaccgtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttc
aaggcggtgcaggacggcaagcaggtggcggtgctggtgccgaccacgctgctggtgcag
cagcactacaatacgttcgccgagcggatgagccagttccccgtctcgatccggcagctg
tcccggttccagacgccgaaggagaccgagcagacgctggagatggtcgccgccggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcgtccacccggttcaagcagttg
ggccttgtgatcatcgacgaggagcagcggttcggcgtcgagcacaaggagcacctgaag
acgctgcgcgcctcggtcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctg
gagatggcgatcaccggcatccgggagatgtccaccatcgccaccccgccggaggagcgg
cacccggtgctcacgttcgtcggcgcgtacgacgaccggcaggtggccgcctccatccac
cgcgagctgctccgcgacggtcaggtcttctacctgcacaaccgggtcgagtcgatcgag
aagacggcccgcaagttgcgggagctggtgccggaggcccgggtcgcggtggcgcacggc
cagatgggcgaggaggcgctggagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctggtctgcaccaccatcgtcgagtccggcatcgacatcccgaacgccaacacgctc
atcgtggagcgggccgacctgctcggcctggcccagctgcaccagatccgcggccgggtc
ggccggggccgcgagcgggcgtacgcgtacttcctctacccgccggagaagccgctcacc
gagaacgcgcacgagcggctggccaccatcgcccagcacaccgaactcggcgcgggcatg
tacgtggcgatgaaggacctggagatccgcggcgccggcaatttgctcggcggcgagcag
tccggccacatcgagggcgtcggcttcgacctgtacgtccggatggtcggcgaggcggtg
tccgcgttcaagggcgagagcaccgaggaggagacggaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacgtcggagtggagcggctgcgcctggagatgtaccgc
aagctcgccgaggcccgcgacgccgagcggctgcgcgaggtggtcgccgagatgaccgac
aggtacggcgagccgcccgcgccggtgcagaacctggtcgcggtggcacggttccggctg
ctggcccgccgctacgggctcaccgacgtgtcgatgcagggcaagcacatccggttcggc
ccgctgccgctgcccgactcgaagcagatgcggctcaagcgctaccacccggactcggtc
tacaagcaggcgctcgaccaggtcagcgtgccccggcccagcacccggcggatcggcggc
gagccgctgcgcgaccaggcgttgctggagtggtgcgagcagctcctggcggatgtcctg
ggcaagcccgaggagctggctcgtgcggtcccggcgggtgcgcgatga
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