Paramicrobacterium chengjingii: HCR76_03275
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Entry
HCR76_03275 CDS
T07557
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mchn
Paramicrobacterium chengjingii
Pathway
mchn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mchn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCR76_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mchn03021
]
HCR76_03275
03400 DNA repair and recombination proteins [BR:
mchn03400
]
HCR76_03275
Enzymes [BR:
mchn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCR76_03275
Transcription machinery [BR:
mchn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCR76_03275
DNA repair and recombination proteins [BR:
mchn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCR76_03275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
GemA
Motif
Other DBs
NCBI-ProteinID:
QPZ39112
LinkDB
All DBs
Position
657772..661653
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVTTFDELRIGLATGDDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHADMPGLENELRLELKTLSDQRDAQIADRLKKLEDA
LAALEEEGAKADQKRRTKDAAEKEMTQLRKSYDEQINQLERVWEDFRNLKVGELKPEDAV
FHELQDRYGLYFEAHMGAEGVQKRLASFDLAAEAESLHLQIAEGKGQKKIRAIKRLKVVN
AFLQTSVSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERAR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTLTEGAVGEGR
AFSSIAEAILAHDQHSLHLNAKIRIRLNGLHFRAGDEPEGFVQGEPFIFDTTLGRAIFNE
AMPEDYPFVNEVADKGKLSSIVNDLAERYSKTDTATTLDNIKDAGFYWATRSGVTVALSD
ILTPASKKDIVAKYEKQAAKVQSQFDKGLTTDAERRQELIKIWTEATDEVAQAMRDAFPA
DNTINRMVSSGARGNWLQIRNIAGMRGLVNDPKGGIIPRPIISSYREGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVREKDCGTSKGLELPIAAFDSQGTLVRDPN
VENSVFARSLAADVVDSEGGVVASAGDDVGDVLIERLVEAGIETIKVRSVLSCESSIGVC
AACYGRSLATGKLVDIGEAIGTIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQE
LFEARTPKGATPIAEAAGRVTIEETDKSRKVILTPDNGDEPVIYPVLKRVTLLIEDGEHV
ELGQPLHVGATDPKEVLRVQGVREVQRHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKV
TVVDHGDTDLLPGELVDRSRYNEFNRAALAEGKRTASARQEVMGITKASLATESWLSAAS
FQETTRVLTQAAMEGKRDPLIGLKENVIIGKLIPAGTGLAKYRNVSVEATEEAKAERYPN
RIFADDGAFSESDLSFVDFDSFSSDDFNPGTYS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaacatttgacgagcttcgcattggcctggctaccggcgacgacatc
cgtcgttggtcgtacggcgaggtgaagaagcctgagaccatcaactaccgcacactgaag
cctgaaaaggacggtctgttcggtgagcagatcttcggacccagccgcgactgggagtgc
tcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgtgagcgctgtggagtc
gaggtcaccaagtcttcagtccgccgcgagcgcatgggccacatcgagctcgctgcgccc
gtcacgcacatctggtacttcaagggcgttccttcgcgactcggttacctgctggacatg
gctccgaaggacctcgagaaggtcatctacttcgctgcctacatggtgatcagcgttgac
gaggaagctcgtcacgcagacatgcctggactcgagaacgagcttcggctcgagctcaag
acgctctccgatcagcgtgacgcgcagatcgccgatcgtctgaagaagctcgaagacgcc
ctcgccgctctggaagaagagggcgcgaaggccgaccagaagcgccgcacaaaggacgcc
gctgagaaagaaatgactcagctccgcaagtcctacgacgagcagatcaaccaacttgag
cgtgtgtgggaagacttccgcaacctcaaggtgggcgagctcaagccggaagacgccgtg
ttccacgagctgcaggaccgctacggcctgtacttcgaggcgcacatgggcgccgagggt
gtgcagaagcgtcttgcgagcttcgacctcgcggccgaagccgagtcgcttcaccttcag
atcgctgagggcaagggtcagaagaagatccgtgccattaagcgactcaaggtcgtcaat
gcattcctgcagacgagcgtctcgcctgccgcaatggttcttgacgttgtgccggtcatt
ccgccagagctgcgcccgatggttcagctcgacggtggtcgcttcgcaacgagtgacttg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgtctccgtcgactgcttgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgttgacgcg
ctctttgacaacggacgtcgcggccgtcccgtcacgggaaccggtaaccgcgcgctcaag
tcgctgagcgacatgctcaagggcaagcagggccgtttccgccagaaccttctcggtaag
cgcgttgactactctggccgttcggtcatcgtcgtcgggccgcagctcaaactgcaccag
tgtggtctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggcagcgaagcgcatggtcgagcgtgcccgt
cccgaggtctgggacgttctcgaggagatcattcgcgagcgtccggttctgctgaaccgc
gcgccgactctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcaatccagcttcacccgctcgtctgtgcagcgttcaacgctgacttcgacggtgaccag
atggccgtgcaccttccgttgtcggttgaggctcaggctgaggctcgtgtgctcatgctc
gcgtccaacaacatcctgaagccgtcagacggccgcccggtcaccctgcccagccaggac
atgatcatcggtctgcatcacctcacgacgctcaccgagggcgctgtaggcgagggccgc
gcgttctcgagcatcgccgaggcgatcctcgcgcatgaccagcactcgctgcacctcaac
gcgaagatccgcattcgcctcaacgggctgcacttccgtgcgggggatgagcccgagggc
ttcgtgcagggtgagccgttcatcttcgacacgacgcttggtcgcgcgatcttcaacgag
gccatgcctgaggactacccgttcgtcaacgaggttgccgacaagggcaagctctcgtcg
atcgtcaacgacctcgccgagcgatactcaaagaccgacaccgccacaacccttgataac
atcaaggatgctggtttctactgggcgactcgctcaggagtgactgtcgcactcagcgac
attctcactccggcgagcaagaaggacatcgtcgccaagtacgagaagcaggcggcgaag
gttcagagccagttcgacaagggactcacgacagacgccgagcgtcgtcaagagctcatc
aagatctggaccgaggcgacagacgaagttgctcaggccatgcgcgacgcattccctgca
gacaacaccatcaaccgcatggtgtcatctggggcacgtggtaactggctgcagattcgc
aacatcgccggtatgcgtggtctggtgaacgatcccaagggtggcatcattccgcgcccg
atcatctcgagctaccgcgagggcctctcggttgccgagtacttcatcgcaactcacggt
gcccgaaagggtcttgctgacaccgctctccgtaccgcggactccggttacctgacgcgc
cgactcgtcgacgtctcgcaggatgtcatcgttcgcgagaaggactgtggcacttcgaag
ggtctcgagcttccgatcgccgcgttcgactcgcagggcacgctcgttcgtgacccgaac
gtcgagaactcggtgttcgctcgctcgctcgcagccgacgttgtcgacagcgaaggtgga
gtcgtagcatccgcgggcgacgacgtgggcgacgttctgatcgagcgtctcgtcgaggcc
ggcattgagacgatcaaggttcgctccgtgctcagctgtgagtcgagcatcggcgtctgc
gccgcatgctacggccgttcgctggcaacgggcaagctcgtcgacattggtgaggcaatc
ggaacgatcgccgcacagtcgattggtgagccgggaacccagctcacgatgcgtacgttc
cacacgggtggttcggcatcggctgacgacatcacgcagggtcttccccgtgtgcaggag
ctgttcgaggctcgtactcccaagggtgcgactccgatcgccgaggcagctggtcgcgtg
acgattgaagagacggacaagagccgaaaggtcatcttgaccccggacaacggcgacgag
ccggtcatctacccggttctgaagcgtgtcacgcttctcatcgaggatggcgagcacgtc
gagttggggcaaccgcttcacgtcggtgcgaccgaccccaaggaggttctgcgcgtgcag
ggcgtccgcgaggttcagcggcacctcgttggtggagtgcagggcgtctaccgttcgcag
ggtgtgccgattcacgacaagcacatcgaagtcatcgtgcgccagatgctccgcaaggtc
accgtggtcgaccacggcgacacggatcttctgcctggtgagctcgttgaccgttcgcgg
tacaacgagttcaaccgtgccgcgctggccgagggcaagcgcaccgcgtctgctcgtcag
gaagtcatgggtatcaccaaggcttcgcttgcgaccgagtcgtggctgtccgcggcatcc
ttccaggagacgactcgcgtgctgacgcaggccgctatggagggcaagcgtgatccgctg
atcggtctcaaggagaacgtcatcatcggtaagctcatcccggctggtacggggcttgcg
aagtaccgcaatgtctctgtcgaggcgacggaagaggccaaggccgagcgttacccgaac
cgcattttcgcggatgacggtgcgttcagtgagtccgacctgtcgttcgtcgacttcgac
agcttctcgagcgacgacttcaatccgggcacgtacagctaa
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