Paramicrobacterium chengjingii: HCR76_09280
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Entry
HCR76_09280 CDS
T07557
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mchn
Paramicrobacterium chengjingii
Pathway
mchn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HCR76_09280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mchn03400
]
HCR76_09280
Enzymes [BR:
mchn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HCR76_09280
DNA repair and recombination proteins [BR:
mchn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HCR76_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QPZ37073
LinkDB
All DBs
Position
1902399..1904822
Genome browser
AA seq
807 aa
AA seq
DB search
MATSHRQSVEVDGRKLQLSNLDKVLYPSTGTTKRDVLDYLREIAPVMLPHCRDRAATRKR
WPDGVGDNEAAQMFFQKDIGDGAPEWVKRRSIQHSDHVNQYPLVNDLATLTWLGQLAALE
IHVPQWRFGPRGAQKNPDRLVLDLDPGEGVTLRECAEVARRARDILHDMGLNVVPVTSGS
KGIHLYAALDESQTSDQVSQVARELARSLEADYPDEIISSMKRSARAGKVFIDWSQNSES
KTTVAPYSLRGRSHPTVAAPRTWHELASPHLKQLDFRDVRGRVKRRGDPMADIAGDDDEP
HRDQLTVYRSKRTQSKTPEPIPDAVALERREAPMFVIQRHDASTLHDDFRLEHEGVLVSW
ALPKGVPTDPKRNRLAIPTEDHPLEYGSFEGAIPSGEYGAGSVEIWDSGTINIEKWRDDE
VIATLHGSAEGGLGSARRFALFRTTDDPKKPQWMIHLMDDKHTPHDDSGSRNARRRRSAS
TDSRPTTLRPMLATRGTPANIRDDSPETWAFEMKWDGMRALVQIDDDSIRLVSRSGRDIT
GTYPEFADASQEVAADTCVLDTELVALDDDGRPDFGRIQQRMNLTRPRDVERALQRVAVT
AMVFDVLEVNGSSTTSLPYSDRRELLDEIIDQDAEGKLQHPAAFTGNLDAAIASSRERGG
EGVMAKRRDSTYAPGSRSRDWIKLPNAEASEVIVIGWRPSDTDPRGFASLLLAVDVGGEL
RYAGRVGTGFTVRDRHSIRSELTRIERKTAPIADVPAADAREAHWVSARRVAEVTYREFT
TDHRFRHPVWRGWRPDKRIADVNPPGS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtcacacaggcagtccgttgaggttgatggtcgaaagctgcaattgtcgaac
cttgacaaagtgctgtacccgtcaacaggaacgactaagcgcgatgttctcgactacctg
cgcgagatcgctcccgtcatgctcccccactgtcgtgatcgtgcggccacccgcaagcgc
tggccagacggcgtgggagataacgaagcagcgcagatgttctttcagaaggacatcggt
gacggcgctcccgagtgggtcaaacgtcgcagcatccaacattctgatcatgttaatcag
tacccgctcgtgaacgacctcgcaacgctcacgtggctcggtcagctcgctgccctcgag
atccacgttccacaatggcgtttcggcccccgcggtgcgcagaagaaccccgaccgcctc
gtactcgatctcgaccccggcgagggcgtgactctgcgtgagtgcgcggaagtcgcacgc
cgcgcccgcgacatcctgcatgacatgggcttgaacgttgtgcctgtgacgagcggcagc
aaggggatccatctctatgccgcgcttgacgaatcgcagacctctgaccaggtgtcacag
gtcgcgcgcgagctcgctcggtcgttggaagcggattaccccgacgaaatcatcagttca
atgaagcgttccgcccgcgcaggaaaggtgttcatcgattggagccagaacagcgagagc
aagacgactgtagctccctattcgctgcgcggacgctcacatcccacagtcgctgctccg
cgcacatggcacgagctggcatcacctcatctgaagcagctcgactttcgcgacgtgcgt
gggcgtgtcaaacgacgcggcgatccaatggccgacattgccggcgacgacgacgagcct
caccgagaccaactgaccgtctatcgatccaagcgcacacagagcaagacgccagagccg
attccggatgctgtcgccctcgagcgtcgcgaggctccgatgttcgtcatccagcgtcat
gacgcgagcacgctgcatgacgatttccggctcgagcacgagggtgtgctcgtgagttgg
gctctgcccaagggcgtgcccacggatccgaagcgcaatcgcctggccattcccacagaa
gatcatccgctggaatatggcagtttcgaaggtgcaattccgtcgggagagtacggcgcc
ggttccgtcgaaatctgggactccggcacaatcaacatcgagaagtggcgcgacgacgaa
gtcatcgctacgctccacggctccgctgagggcggcctgggcagtgcacgacggttcgcg
ctgtttcgcaccacggacgatccgaagaaaccgcagtggatgatccacctcatggacgac
aagcacacgccccatgacgatagtggctctcggaatgcacggcgacgccgctcggcctcg
accgactcgcggcccacgacgctacgtcccatgctcgcgacacgcgggacccccgcgaac
atcagggacgactcaccggagacgtgggcattcgagatgaagtgggacggcatgcgtgct
ctcgttcagatcgacgacgactcaatacggcttgtgagccgctcggggcgcgacatcacg
ggaacctacccggagttcgccgatgcttcccaggaggtcgccgcagacacgtgcgtcctc
gacaccgagctcgtcgcgctcgacgatgatggacgccccgatttcggccgtatccagcag
cgcatgaacctcactcgcccacgcgatgtcgaacgcgcactccagcgtgtggcagtgacg
gccatggtcttcgacgttctcgaggtgaatggcagttcgacgacatcgctgccgtacagc
gatcggcgggagctgcttgacgagatcattgatcaggatgccgagggcaagctccagcat
ccggctgcgttcacgggcaatctcgatgcggcgatcgcctcgagccgagaacgcggcggc
gaaggtgtgatggccaagcggcgtgacagcacgtatgctccgggctcacgctcccgcgac
tggatcaagcttcccaacgccgaggcgagcgaagtcatcgtcatcggctggcggccgagc
gacaccgatccgcggggattcgcctcgctgctgctcgctgtggatgtcgggggcgagctc
aggtatgccgggcgggtcggaacagggttcaccgtgcgcgaccgccacagcatccgctct
gagctcacccgcatcgagcgcaagacggccccgatagctgacgttccggccgcagacgca
cgtgaagcgcactgggtgagcgctcgccgcgtcgccgaggtgacgtaccgcgagttcaca
actgaccatcggttccggcatccggtctggcgcggctggcgtccagacaagaggattgcc
gacgtgaaccctcccggatcttga
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