Paramicrobacterium chengjingii: HCR76_13895
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Entry
HCR76_13895 CDS
T07557
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mchn
Paramicrobacterium chengjingii
Pathway
mchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCR76_13895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchn03019
]
HCR76_13895
03009 Ribosome biogenesis [BR:
mchn03009
]
HCR76_13895
Enzymes [BR:
mchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCR76_13895
Messenger RNA biogenesis [BR:
mchn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCR76_13895
Ribosome biogenesis [BR:
mchn03009
]
Prokaryotic type
rRNA helicases
HCR76_13895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QPZ37887
LinkDB
All DBs
Position
2863435..2865252
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AA seq
605 aa
AA seq
DB search
MTSSDPVAPADDTAAPAQTTFADLGLSDAVLKAVRDVGYETPSAIQEATIPTLLGGRDVV
GLAQTGTGKTAAFALPILSRLDSAQKKPQALVLSPTRELALQVCESFEQYAAHLKGVHVL
PVYGGQAYGVQLSALRRGVHVVVGTPGRIMDHIAKGTLDLSELTYLVLDEADEMLKMGFA
EDVETILAETPVEKQVALFSATMPPQIRRISKKYLRDAEEITVKSKTTTSANTTQRYLMV
SYPQKVDALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAISGDVAQAQRERT
VGQLKSGKLDILVATDVAARGLDVDRISHVVNFDIPIDTESYVHRIGRTGRAGRSGSAIS
FVTPRERRLLGAIEKATRQPLEQMQLPSVDDINVTRLTRFDDAITAALNQTKRIDAFRDI
IGHYVEHHDVPEADVSAALAVVAQGETPLLLSAEDEMRLARDDRKAKQKNVDGADRRKRS
SKSMAPYRIEVGRRQRVDPRQIVGALANEGGLSREDFGAIDIRLDFSVVELPADLPKDFF
SRVANTRVSGVQIDIKPDRFGGPRKRDGGRGGSHDRAGKRGSHDRGGKRDGGWKDNDGAS
RKPRH
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctcagaccccgtagcgcccgcggatgatactgccgcgcccgcccagacgacg
ttcgccgatctcgggctcagcgatgctgtgctgaaggccgtgcgcgacgtcggttacgag
acaccgtccgccattcaggaagcaaccattccgacgttgctcggcggccgcgacgtcgtc
ggcctcgctcagaccggcacgggcaagacagctgccttcgccctccccatcctctctcgt
ctcgactccgcccagaagaagcctcaggcactcgtgctctcgccgacgcgtgagctcgcc
ctgcaggtctgcgagtcgttcgagcagtatgccgcacacctcaagggtgttcacgtgctt
cccgtctacggtggccaggcctacggtgtgcagctgtctgcgctgcgccgtggcgttcac
gttgtcgtcggcacccccggccgcatcatggaccacattgccaagggcactctcgacctc
tccgagctcacgtacctcgtgctcgacgaggcagatgagatgctcaagatgggcttcgcc
gaagacgtcgagacgattctcgccgagactcctgtcgagaagcaggtcgccctgttttcg
gcgacgatgccaccgcagattcgccgcatttccaagaagtatctgcgggatgctgaagag
atcaccgtcaagagcaagacgacgacctcggccaacaccacccagcggtacctcatggtc
tcgtacccccagaaggtcgacgcgctcacccgcatcctcgaggtcgagaacttcgacggc
atgatcgtgttcgtacgcacgaagaacgagacagagaccctcgctgagaagctgcgggca
cgaggctactcggcagccgccatcagcggggatgtcgcacaggcgcagcgcgaacgcacc
gtcggacagctgaaatcgggcaagctcgacattctcgtggcaaccgacgttgccgcccgc
ggactcgacgtcgatcgcatcagccacgtcgtcaacttcgacattcccatcgacaccgag
tcatacgtgcaccgcatcggccgcacaggccgcgccggccgcagcggaagcgcgatcagc
tttgtcacgccgcgcgaacgccgtctgctcggcgcaatcgagaaggcgacgcgtcagccc
ctcgagcagatgcagctgcccagcgtcgacgacatcaacgtcacgcgtctcacgcgattt
gacgacgccatcaccgcggcgctcaaccagacaaagcgcatcgacgccttccgcgacatc
atcggtcactacgtcgagcaccatgatgttcccgaggccgacgtgtcagcggccctcgcc
gtcgttgcacagggcgaaacgccattgctgctctcggctgaagacgaaatgcggctcgcc
cgcgacgatcgcaaggcgaagcagaagaacgtcgacggcgctgatcgccgcaagcgatcg
tcaaagtcgatggcgccgtaccgcatcgaggtcggccgccgtcagcgcgtcgacccacgg
cagatcgttggcgctctcgcgaacgagggcggtttgagccgtgaagacttcggcgcgatc
gacattcgcctcgacttctctgttgtcgaacttcccgccgacctcccgaaggacttcttc
tcacgcgtggcgaacacacgtgtcagcggtgttcagatcgacatcaaaccggatcgtttc
ggcggaccacgcaagcgcgacggtggtcgcggcgggtcccacgaccgcgcaggcaagcgt
gggtcacacgaccgcggtggaaagcgcgacggcggctggaaagacaacgacggcgcttcc
cgcaagccccgtcactga
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