Mesorhizobium ciceri biovar biserrulae: Mesci_3564
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Entry
Mesci_3564 CDS
T01401
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mci
Mesorhizobium ciceri biovar biserrulae
Pathway
mci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesci_3564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mci03019
]
Mesci_3564
03009 Ribosome biogenesis [BR:
mci03009
]
Mesci_3564
Enzymes [BR:
mci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mesci_3564
Messenger RNA biogenesis [BR:
mci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mesci_3564
Ribosome biogenesis [BR:
mci03009
]
Prokaryotic type
rRNA processing factors
Mesci_3564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADV12684
UniProt:
E8TLD3
LinkDB
All DBs
Position
complement(3716596..3719544)
Genome browser
AA seq
982 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVIRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDGDGDDRQSRDRGRRGR
RRGGKPRDRGEHKRDAADSGEASDAADEAEEGADAGVEDISHTSEIIEHAADSSEHADAS
EHGEDSAEQDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSS
HPDDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTT
YLSLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTK
AEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGY
REAKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEA
LVAIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRS
VEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSS
VALMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITVEADDSV
GSQHYAIFRGALAEKPEGFVEARSFPAYVEPDEPEDEIAVIEEDDEAPIQAEQPRQQPQQ
QQPRPAAGGEEGEGRDRKRRKRRRRRGGKDRDREHGAPADGASVSAPAGEFSDSDSAAGD
GDAEADDNAPVGVSETPATAEASDEGQGKKRRRGKRGGKRNRREDGEGEAEASAGEAADA
SEGEVSATEVIASEPVVTAAAEEPVVLAPANDDAPSTEKPKKPRRAAKPKKAAAEIVAEE
PAAEAEAPVETPATASDEAAAVEKAPKARPSRRKPAAVNAPVEPVVSSTVAEEPAAKAED
KTDDKTDDKPKRGGWWQRKGFF
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaaatgctgatagacgcctcccacccggaggaaacacgcgttgtcgtcata
cgcggtaaccgtattgaagaattcgactttgaatcccaggacaagaagcagctcaaagga
aacatctacctagcccgcgtaacgcgcgtagagccctcccttcaggcagcctttgtcgaa
tatggcggcaaccgtcacggttttctcgccttcagtgaaatccaccccgattactaccag
attccggtcgccgatcgtcaggcactgctgcgcgcggaagcgcaggaggctgaggacgag
gagaacgaggacggcgacggcgatgatcgccagagccgcgatcgcggacggcgcggccgc
aggcgcggcggcaagccccgcgaccggggcgagcacaagcgcgatgcagccgattccggc
gaggcgagcgacgctgccgacgaggcagaagaaggtgccgacgctggtgtcgaggacatc
tcgcacacgtccgagatcatcgaacatgcggctgattcgtccgaacatgcagatgcgtcc
gagcatggcgaggattcggccgaacaggacgaaggcgaaatccgcgaaggcggcccgacg
tcgatcgccgcctcggtcgaggccgatgtgatttccgaagccgtcccgctggccgaacaa
ggcagcgaagcgacctccggcgacaatgatcgcggcatgctggaagaagtgcagtcctcg
catccggacgatcacgaggtcgaatcggtcggcgccgaggatgcgctggaagaagtgcgc
aaccgccgcaagccggtgcgccgccagtacaagatccaggaagtgatcaagcgccggcag
atcctcctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacc
tatctgtcgctggccggccgctattcggtgctgatgccgaacacggcgcgtggcggcggc
atttcgcgcaagatcaccagcgcggtcgaccgcaagcggctcaaggaggtcgtcgccgat
ctcgaagtgccgcagggcatgggcgtcatcctgcgcaccgccggcgagagccgcaccaag
gcagagatcaagcgcgactacgaatatctgatgcggctttgggaaaatgtccgcaatctc
accttgcagtccacggcccctgccctggtctacgaggaaggcagcctgatcaagcgctcg
gtgcgcgacctctacaacaaggatatcgacgagattcttgtctccggcgaggaaggctac
cgcgaggccaaggacttcatgcgcatgctgatgccgagccacgccaaggtggttcagccg
ttccgcgacacgacgccgatcttcgtacgcaacggcatcgaggcacagctcgaccgcatg
ctgcagccgcaagtgacgctgaagagcggcggctacatcatcatcaaccagaccgaagcg
ctggttgccatcgacgtgaattcgggccgctccaccaaggagcactcgatcgaggacacc
gcgctccacaccaatctggaagcggccgaggaagtcgcgcgtcagctaaggctgcgcgat
cttgccggcctgatcgtcatcgacttcatcgacatggaggagaaccgcaacaaccgctcc
gtcgagaagcggctgaaggatcacctcaagaacgatcgtgcgcgcatccaggtcggccgt
atctcgcatttcggcctgatggagatgtcacgccagcgcatccgcgccagcgtgctggaa
tcgaccatgaagccttgcccgcattgcggcggcaccggccatgtgcgctccgattcgtcg
gtcgcgctgatggtggtgcgggcgatcgaggaattcctgctcaaggattcgcgcagccac
atcacggtgcggacgccggcggcgacagcactctacgtgctcaaccacaagcgcggcacg
ctggtggaactcgaaagccgcttcgggctgacgatcaccgtcgaggccgacgattcggtg
ggttcgcagcactatgcgatcttccgcggcgcgttggctgaaaagccggaaggctttgtc
gaggcgcgcagcttcccggcctatgtcgagccggacgagcccgaggatgagattgccgtc
atcgaggaagacgacgaggcgccgatccaggcagaacagccacgccagcagccgcagcaa
cagcagccgcggcccgctgccggtggtgaggaaggcgaaggccgcgaccgcaagcgccgc
aagcgtcggcgtcggcgtggcggcaaggatcgcgatcgcgaacatggcgcccctgcggac
ggtgcttccgtctcggctccggccggcgagttttcggactcggactcggccgccggagat
ggcgacgcggaagcggacgacaatgcccctgttggtgtttccgaaactcctgccacagct
gaagcttcggacgaaggccagggcaagaagcgccggcgcggcaagcgcggcggcaagcgc
aaccgccgcgaagacggtgaaggcgaggctgaggcaagtgctggcgaagcagccgacgcg
tccgaaggcgaagtctcggcaaccgaggtgatcgccagcgagccggtggttaccgcagcg
gccgaagagccggtggtgcttgctccggccaatgacgacgcgccgagcacggagaagccg
aagaagccacgccgtgccgccaagccgaagaaggccgcagccgaaatcgtcgccgaagag
ccggctgccgaggcggaagcaccggtcgagacgccggccacggcgtccgacgaagcagcg
gctgtcgagaaggcaccgaaggcccgcccgtcgcggcgcaagccggcggcggtgaatgcg
ccggtcgagccggtggtgtcttcgaccgtagcggaagaacccgcggccaaggccgaggac
aagaccgacgacaagaccgacgacaagccgaaacgcggcggatggtggcagcggaagggc
tttttctaa
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