Mesorhizobium ciceri biovar biserrulae: Mesci_3669
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Entry
Mesci_3669 CDS
T01401
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mci
Mesorhizobium ciceri biovar biserrulae
Pathway
mci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesci_3669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mci03019
]
Mesci_3669
Enzymes [BR:
mci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mesci_3669
Messenger RNA biogenesis [BR:
mci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mesci_3669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADV12789
UniProt:
E8TMG7
LinkDB
All DBs
Position
3819797..3821221
Genome browser
AA seq
474 aa
AA seq
DB search
MTNENTLPGSNTAELTGFAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVST
ALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGF
INDVKRIAKATAPDRQTVLFSATMPNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVF
ARTKQKRQVLSTMLADETMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPLRNPAEKNERFEPANDRNDRNGRRDG
RRPGGENKGNGFGKKRFGDKPAFAGERKPDGAKPAFKGNNKRRFGGKRPAARAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacactttgcccggtagcaacactgcggaactcaccggtttcgcggca
ctgggtattacgggcgcgctgctcaaggccacccacaacgccggcttcaccgagccgaag
cctatccaggcgcaggcgatcccgccgcagatggaaggccgtgacattttcggcatcgcc
cagaccggctctggcaagaccgcggccttcgctctgccgatcctgtcgaagatcatcgca
ctcggcaccaagcgccggccgaagacggcgcgtgcgcttatcctggcgccgacgcgcgaa
ctcgccgtgcagatcgaggacacgatcaagatcctcgccaagggcgcgcatgtctcgacc
gcgctcgtgcttggcggcgtctcgcgcttcagccaggtgaagaaggttgcgcccggcgtc
gatatcctgatcgcaacgcccggccggttgaccgacctggtgcgtgagggcgacctcatg
cttgccgacaccaaatggctggtgctcgacgagggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccaaggcgaccgcgcccgatcgtcagacggtgctgttc
tcggcgaccatgcccaatgaaatcgccgaactggccaagggcctgctgaagaacccgatc
cgcgtcgaagtcgcgccgcaaagcacggcagcggccgagatcgtgcaaggcgtcgtcttt
gcccgcaccaagcagaagcgccaggtgctgtcgacgatgctcgccgatgagacgatgaag
tccgtcatcatcttctcgcgcaccaagcatggcgccgacagggtgaccaaggacctcgag
cgcgatggcttcaaggccgccgtcattcacggcaacaagtcgcagaacgcccgccagaaa
gcgctgaacgatttccgcgacggctcggtgcgcattctggtggcgaccgacatcgcggcg
cgcggcatcgacgtacccggcatcagccatgtcgtgaatttcgatctgcctgatgaagcc
gagagctacgtccaccgcatcggccgtaccggccgcaacggcatggacggcatcgcgatc
acgctttgcgatccttccgagaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aagctgccgatcgttgccgaccatctcggcagccccgatccgctgcgcaatccggctgaa
aagaacgagcgtttcgagccggccaatgaccgcaacgaccgcaatggccgtcgcgacggc
aggcggcccggtggcgagaacaagggcaacggctttggcaagaagcgcttcggcgacaag
ccggccttcgccggcgagcgcaagccggacggcgccaagccggccttcaagggcaacaac
aagcgccgcttcggcggtaagcgtccggctgcgcgggccgcgtaa
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