Mesorhizobium ciceri biovar biserrulae: Mesci_6323
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Entry
Mesci_6323 CDS
T01401
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mci
Mesorhizobium ciceri biovar biserrulae
Pathway
mci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mesci_6323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mci03400
]
Mesci_6323
Enzymes [BR:
mci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mesci_6323
DNA repair and recombination proteins [BR:
mci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mesci_6323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_30
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADV15305
UniProt:
E8TPS0
LinkDB
All DBs
Position
pMESCI01:253924..257313
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AA seq
1129 aa
AA seq
DB search
MRAARNGVAVLTFFWGQGEISVNRHISRTDVEQIDHTDDSGFTIEHGVPPSSAIAAALAG
GLEASRHKHIIHITASERSADEIVGALRQFLPHAEIILLPSWDCLPYDRVWPTRANMGRR
LRALCHMATKPDRARIAVMSIEASLQRVPPAQVIAGGFAILEVGQKFDRDDFRTRSEAFG
YVVDERVDEPGEIAFRGDLMDIFPAGAEDPVRVVLGPDSCIRELKTYDPISQLSDQVRDS
IAVGPASELMFKAGDHPELTAMRATSMEERLVALFGAMPSVFDSASSASISFLEGIDGQP
LDKILDLIEDARRARQEAAGREKPLPEQFYLSREEWDASMCNRSTRLAVSAERVPKFFRQ
ARPGYEIAEFVTRQTSAGARVVLTGDASELQRADRLLNRKLGRRAEEAVDLPQILSAARG
SLLKAGFVLDEGFVDAQSGIAMVAAADLFGPALKADAGMAASILEPELRIGDVVVHEDHG
LGVLAAVEQVDLAGQHQDVVRLEYHGGASLLVPVDDFGKIWRYGSEPEAVSLDRLNGEGW
PKRREAALREIDRLAKRLVGLAEMRSSQPAEIIKPSRADLARFAAKFPYTETPDQAAAIR
AVLDDLSSGRTMNRLVCGDVGFGKTEVALRACAAAALCGKQVAVIAPTTVLARQHYETFS
RRFAGTGLQVAHLSRMVGAAKAKAAKEGLRSGQVTIVVGTQALASRSVTFANLGLLVIDE
EHRFGVKLKLALRNMAPCLHTLSMSATPIPRTLQSALSGIQDVSVLNSPPAKRRPVRTIL
AAFDPASVRAALLREFHRGGQSFFVVPRIEDIGPVSDQLNRLVPELGVMTAHGEMKGRQL
DEVMVGFADGDGDILLSTDIIESGLDVPRANTIIVWRPDRFGLAQLHQLRGRVGRGAMQA
AAFLLTEPGVELADGTRARLSTMLALDRLGSGLAISQRDLDLRGAGDLFGEDQAGHMKLI
GVGLYEHLLERAVSAAGEGADPNRQLANINVPAKGAFPESYVNEPTVRVGLYARLSRIRS
DLDLDAFSEELEDRFGDMPGEVTVLLELTRLRIAASELGVGKVDVGPEAVAITLRNKPLA
SRWRDRKVLGLEYRNGRVIFRRIEPRVSGIDAVRLALDAIRAVQPKHEV
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgccaggaacggggtcgctgtgctgacgttcttctggggacaaggtgagatt
tcagtgaacaggcatatttcgcggacggatgtcgaacaaatcgatcacacggatgacagc
gggtttacgatagagcacggcgtcccgccatcttcagctatcgcggcagcgctggccggt
gggctggaggccagccggcacaagcacattatccatataactgcctcggaacgcagcgcc
gacgagatcgtcggggctttgcgtcagttcctgccgcacgcggagatcatcttgctgccg
tcctgggattgcctgccttacgacagggtgtggcccacacgcgccaatatggggcggagg
cttcgtgcgttgtgtcacatggcaacgaagcccgatcgtgcgcgcatcgctgtaatgtcg
atcgaagccagtctgcagcgggtgccgcccgcccaggtcattgctggcggtttcgcaatt
ctggaggtgggacaaaagttcgaccgggatgatttcagaacaaggtccgaagcttttggc
tatgtcgtcgacgagagggtcgacgaaccgggtgaaatagcttttcggggcgatctcatg
gacatcttccccgctggcgcggaggaccccgttcgcgtcgtccttggcccagacagctgc
attcgagagctcaaaacctacgatccgatcagtcagctcagcgaccaggttcgagactcg
attgctgtcggaccggcatccgagctgatgtttaaagctggtgatcatcctgagctgaca
gcgatgcgcgcgacgtcgatggaagagcgcctggtcgcattatttggcgcgatgccatct
gtcttcgacagtgcgtcgagcgcctcgatctccttccttgaagggatcgacgggcagccg
ctcgacaaaattctggacctgatcgaggatgcacgccgtgccaggcaggaggctgccggg
cgcgagaaacctttgccggaacaattttacctgtcgcgtgaagagtgggatgcttccatg
tgcaaccgctccacgagacttgccgtttctgccgagcgagttcccaaattctttcgccag
gcccggcccgggtacgaaatcgctgaattcgtgacaaggcagacaagcgccggggccagg
gtggtgttgaccggcgatgcctctgaactgcagcgagcagatcgcctgctcaatagaaag
ctaggccggcgggctgaggaagcggtcgacttaccgcaaatactttccgccgcgagaggc
tctcttctcaaggctggcttcgtcctcgatgaagggtttgtcgacgcgcaatccggtatc
gcgatggtcgccgcagccgacctgtttggccctgcgttgaaggcggatgccggcatggcc
gcaagcatactcgaacccgagttgcgcatcggcgacgtcgtcgtccatgaagaccatggc
ctgggcgtgctcgcggcggtcgaacaggtcgacttggctggtcagcaccaggatgttgtc
aggctggaatatcatggcggggcttccttgctggttccggtcgacgactttgggaaaata
tggcgctacggctcggaaccggaggcagtgtcgctcgatcgcctcaacggcgagggctgg
cccaagcgacgcgaggctgcgttgcgcgagatcgacaggctggccaagcgcctggtgggc
cttgccgagatgaggtccagccagcccgccgagatcatcaagccctcccgcgcggacttg
gcccgttttgcggcgaaatttccctataccgagactcctgaccaggccgccgccatccgc
gctgtgctcgacgacctttcctcggggagaacaatgaaccggctcgtctgcggtgatgtt
ggcttcggcaagacagaggtggctttgcgtgcttgcgccgccgccgccctctgcgggaaa
caggttgcggtcatagcgccgacaaccgtgttggcacgacagcactatgagacgttcagc
cgccgtttcgcaggaacgggcctgcaggtcgcccacctgtcaaggatggtcggggcagca
aaggcaaaagcggcaaaggagggcctgcggagcggccaggttacgatcgtcgtgggtact
caggccttggcgtccaggagcgtcactttcgccaatcttggactgctggtgattgacgag
gagcaccggttcggcgtcaagttgaagctggccctgcggaacatggcgccctgccttcac
acgctgagcatgagcgccaccccgataccgcggacgctgcaatcggcgctgtcgggcatc
caggatgtcagcgttctaaactctccgcccgccaaaagacgtcccgtccgcacgatcctg
gcagcgttcgatccagcatcggtgcgcgcggccctcttgcgtgaatttcacaggggtgga
cagagtttcttcgtggttcctcgcatcgaggacattggcccggtctctgaccagctgaac
aggctggtgccggaactcggcgtcatgacggcgcacggtgaaatgaaagggaggcagctg
gacgaagtcatggtcggattcgctgacggtgatggcgacattttgttgagcaccgacatc
atcgagagtgggctcgatgtacctcgagccaacaccatcattgtctggcgcccggaccgg
ttcggtctggcgcagttgcaccagctacggggtcgggtcggtagaggagcgatgcaagcg
gctgcgtttcttctgacggaacctggcgttgagctggccgacggcaccagggcccggctt
tcgacaatgcttgcgctcgatcggcttggctccggcctggcaatcagtcaaagggacctc
gacctgcgcggcgccggcgatctcttcggcgaagatcaggctgggcatatgaaactgatc
ggagtgggcctctacgagcacttgctggagcgggcggtctcggcggctggagaaggggcc
gaccccaacaggcaacttgccaacatcaacgtgcctgcaaaaggggcttttcccgaaagc
tatgtaaacgagcctactgtccgtgttggcctctatgcgcggctctctcgtattcgttct
gacttggaccttgatgcattcagcgaggagctcgaggaccgctttggtgacatgcctggc
gaagtgaccgttctgctggaacttaccaggttgcggatagcagcgtcggaactgggtgtc
ggcaaagttgatgttgggcccgaagccgtcgcgatcaccttgcgcaacaagcctctggcg
tcacgctggcgggacaggaaggtgttgggcctggagtaccgaaacggccgcgtgattttc
aggcggatcgagccccgcgtctcaggcatcgatgccgttcgcttggcgctagatgccata
cgtgcagttcagccaaagcacgaggtctga
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