Mesorhizobium ciceri CC1192: A4R28_08250
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Entry
A4R28_08250 CDS
T08712
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mcic
Mesorhizobium ciceri CC1192
Pathway
mcic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R28_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcic03019
]
A4R28_08250
Enzymes [BR:
mcic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4R28_08250
Messenger RNA biogenesis [BR:
mcic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R28_08250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMX93082
UniProt:
A0AB38T458
LinkDB
All DBs
Position
complement(1717229..1718653)
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AA seq
474 aa
AA seq
DB search
MTNENTLPGSNTAELTGFAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVST
ALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGF
INDVKRIAKATAPDRQTVLFSATMPNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVF
ARTKQKRQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPLRNPAEKNERFEPANDRNDRNGRRDG
RRPGGENKGNGFGKKRFGDKPAFAGERKPDGAKPAFKGNNKRRFGGKRPAARAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacactttgcccggtagcaacactgcggaactcaccggtttcgcggca
ctgggtattacgggcgcgctgctcaaggccacccacaacgccggcttcaccgagccgaag
cctatccaggcgcaggcgatcccgccgcagatggaaggccgtgacattttcggcatcgcc
cagaccggctccggcaagaccgcggccttcgctctgccgatcctgtcgaagatcatcgca
ctcggcaccaagcgccggccgaagacggcgcgtgcgcttatcctggcgccgacgcgcgaa
ctcgccgtgcagatcgaggacacgatcaagatcctcgccaagggcgcgcatgtctcgacc
gcgctcgtgcttggcggcgtctcgcgcttcagccaggtgaagaaggttgcgcccggcgtc
gatatcctgatcgcaacgcccggccggttgaccgacctggtgcgtgagggcgacctcatg
cttgccgacaccaaatggctggtgctcgacgagggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccaaggcgaccgcgcccgatcgtcagacggtgctgttc
tcggcgaccatgcccaatgaaatcgccgaactggccaagggcctgctgaagaacccgatc
cgcgtcgaagtcgcgccgcaaagcacggcagcggccgagatcgtgcaaggcgtcgtcttt
gcccgcaccaagcagaagcgccaggtgctgtcgacgatgctcgccgatgaggcgatgaag
tccgtcatcatcttctcgcgcaccaagcatggtgccgacagggtgaccaaggacctcgag
cgcgatggcttcaaggccgccgtcattcacggcaacaagtcgcagaacgcccgccagaaa
gcgctgaacgatttccgcgacggctcggtgcgcattctggtggcgaccgacatcgcggcg
cgtggcatcgacgtgcccggcatcagccatgtcgtgaatttcgacctgccggatgaagcc
gagagctacgtccaccgcatcggccgtaccggccgcaacggcatggacggcatcgcgatc
acgctttgcgatccttccgagaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aagctgccgatcgttgccgaccatctcggcagccccgatccgctgcgcaatccggctgaa
aagaacgagcgtttcgagccggccaatgaccgcaacgaccgcaatggccgtcgcgacggc
aggcggcccggtggcgagaacaagggcaacggctttggcaagaagcgcttcggcgacaag
ccggccttcgccggcgagcgcaagccggacggcgccaagccggccttcaagggcaacaac
aagcgccgcttcggcggtaagcgtccggctgcgcgggccgcgtaa
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