Mesorhizobium ciceri CC1192: A4R28_24050
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Entry
A4R28_24050 CDS
T08712
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mcic
Mesorhizobium ciceri CC1192
Pathway
mcic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R28_24050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcic03021
]
A4R28_24050
03019 Messenger RNA biogenesis [BR:
mcic03019
]
A4R28_24050
Transcription machinery [BR:
mcic03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A4R28_24050
Messenger RNA biogenesis [BR:
mcic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4R28_24050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
DnaB_C
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
AMX95869
LinkDB
All DBs
Position
complement(4987416..4988672)
Genome browser
AA seq
418 aa
AA seq
DB search
MKLAEFKNKKPPELIAYAESLEVENASVMRKQELMFAILKKLAAQEIEIIGDGVVEVLQD
GFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTIN
FDDPEKIRHKIHFDNLTPLYPTKRLKMEIENVTTKDISARVIDLVAPIGKGQRALINAQP
RTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAVRHV
QVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRKVADKRIYPAMDI
LKSGTRKEDLLVSKQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNADFFDSMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgccgagttcaagaacaagaaaccgccagagctgatcgcttatgccgaatcg
ctcgaggtcgaaaacgccagcgtcatgcgcaagcaggagctgatgtttgcgatcctgaag
aagctggccgcccaggagatcgagatcatcggtgatggcgtggtcgaggtgctgcaggac
ggtttcggcttcctgcgctccgccaacgccaattacctgccaggtcccgacgacatctat
atttcaccgtcgcagatccggcgcttttcgctgaagaccggcgatactgtcgaagggccg
atccgcagcccgaaagagggcgagcgctatttcgcgctgctcaaggtcaacaccatcaat
ttcgacgatcccgagaagatccgtcacaagatccacttcgacaatctgacgccgctctat
ccgaccaagcggctgaagatggagatcgagaatgtcaccaccaaggacatatcggcccgt
gtgatcgacctggtggcgccgatcggcaagggacagcgcgccttgatcaacgcgcagccg
cgtaccggcaagacggttctgatgcagaacatcgcccactcgatcaccgccaaccacccg
gaatgctatctgatcgtgctgctgatcgacgagcggccggaagaagtgaccgacatgcag
cgctcggtgaagggagaggtgatctcctcgaccttcgacgagcccgcggtgcgccacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgcctggtcgaacatggccgcgacgtc
gtcatcctgctcgattcgatcacccgtctcggccgcgcctacaacaccgtcgtgccgtca
tccggcaaggtgctgaccggtggtgtcgacgccaacgcgctgcagcggccgaagcgcttc
ttcggcgccgcccgcaacatcgaggaaggcggttcgctgaccattatcgccaccgcgctg
atcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
tgcgaaatccagctcgaccgcaaggtggccgacaagcgcatctatccggccatggacatc
ctgaagtccggcacccgcaaggaagacctgctggtttccaagcaggacctgcaaaagatc
ttcgtgctgcgccgcatcctggcgccgatgggaaccaccgacgcgatcgagttcctgatc
gacaagctgaagcagaccaagaccaatgcggatttcttcgattcgatgaacacgtaa
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