Melitaea cinxia (Glanville fritillary): 123653442
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Entry
123653442 CDS
T09237
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123653442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123653442
Enzymes [BR:
mcix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123653442
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123653442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
123653442
NCBI-ProteinID:
XP_045445397
LinkDB
All DBs
Position
5:complement(4922507..4938638)
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AA seq
529 aa
AA seq
DB search
MEITRKNFSEQIDNITKNLQRSCFVGFDAEFTAILSGDGFKYRLFDTNKDRYDLTKNEVN
KMIMTQVGLTMFQYERKLDNYIAVGYTFHLCPQNLGDIDQSFIFQASTLKFLCKHNFDFN
KFIYEGIPYLSRHEENTIRQQIQNKTLNSNLIQKMELQDEKQLQKYCSEVSRWLNNGDGD
TLYLDVESPVLRYVVHNEIRLRFPDVLTTDSLGNSNKVLIYRDKNVEGANSAPMATLEEN
LMNNILGFSQIINLLVEYKKPIVGHNLFLDVLLLHSQFIGPLPKKYSLFKKNVNSLWPMI
YDTKHISHEMNRKLSVSEVWKSNSLQDLYEFFSEAKCKRLEKGINFIKLSSPFNVKQTYH
EAGWDSYCAGYCFIRLGHWAACETSGSYKPVGPKEKLAALEVYCNKINVIRGAVPYMNLV
SDDPPSHRPALLHIKSMKERMIDIAKISSVIESPGSVDIKRYGNRTAIIAAGTRITADKI
LKQFKHDRDYRIAPYSFVKHSPIGRAAIWSSAIITGSLLLYFLHRKVNK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaaataacaagaaagaatttttctgaacaaatagacaacataaccaaaaatttgcaa
cgatcctgtttcgttgggttcgatgcggaattcacggctattttgtccggagatggtttt
aaatatagattatttgacaccaataaagacaggtatgatcttacaaagaatgaagtcaac
aaaatgataatgacacaagtcggtctaacgatgtttcagtatgagcgaaaattagataac
tacatcgctgttggatacacattccacttatgtccacaaaaccttggcgacattgatcaa
tccttcatattccaagcgtcaactcttaaatttctatgcaaacataattttgatttcaat
aagttcatatatgagggtatcccatacttgagtagacatgaagaaaatactataagacag
cagatacaaaataaaacattgaacagtaatctaattcagaaaatggagcttcaagatgag
aaacagcttcaaaaatactgctccgaggtttcaagatggctgaacaatggtgatggggat
actctctacttagatgttgaaagtccagtattgcgttacgttgtccacaatgaaataaga
ctgagatttccagatgtacttactactgatagcttaggtaatagcaataaggttctaata
tacagagataaaaatgtagagggcgcaaacagtgcaccaatggctacgctagaagaaaat
ctaatgaacaatatactaggcttttcacaaataataaacctacttgtagaatataaaaaa
cctattgtaggtcataacctattcctagatgttttacttttacatagtcaattcatagga
cccttgccaaagaaatattcattgtttaagaaaaatgttaatagtttatggcctatgata
tatgatacaaaacatatttctcatgaaatgaacagaaaactatcagtgagtgaagtttgg
aaatcaaattctctacaagacctgtatgaatttttttcagaggccaaatgtaagagatta
gaaaaaggtattaattttataaaacttagcagtccgtttaatgtgaaacaaacttatcac
gaagctggttgggactcttactgtgcaggttactgtttcatacgtttgggtcactgggca
gcctgtgaaactagtggcagttacaaaccagttggacctaaggaaaaactggctgcctta
gaagtttactgtaataaaatcaatgttattcggggagcagtaccttacatgaatctcgta
agtgacgatccgccaagccatcgacccgccttacttcacattaaatccatgaaggaacga
atgattgacatcgcaaagatatcatctgtgatcgaaagccccggctccgtggacatcaaa
cgctacggcaatcgaacggctattatagcggcaggaacgcgtattacggcagataaaata
ttgaagcaattcaaacacgaccgagactacagaatagcgccgtacagttttgtcaaacat
tctcccattggccgcgccgcgatttggagcagtgccattatcaccggtagtttattactt
tatttcttacatcggaaagtgaataaataa
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