Melitaea cinxia (Glanville fritillary): 123656336
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Entry
123656336 CDS
T09237
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03440
Homologous recombination
mcix03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123656336
03450 Non-homologous end-joining
123656336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcix03032
]
123656336
03400 DNA repair and recombination proteins [BR:
mcix03400
]
123656336
DNA replication proteins [BR:
mcix03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
123656336
DNA repair and recombination proteins [BR:
mcix03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
123656336
BRCA1-C complex
123656336
NHEJ (non-homologous end-joining)
MRX complex
123656336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
DUF4407
AAA_13
AAA_29
Laminin_II
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
123656336
NCBI-ProteinID:
XP_045447988
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Position
9:10193605..10216393
Genome browser
AA seq
1303 aa
AA seq
DB search
MAGIKSLAVRGIRSFGPEECDEQRISFEKPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SRNECFVHDAKVNRSTEVMGQVKLKIINAKDKQLEVSRSMRVTAYQNKKPKFQTLDSFLS
VVDDNGKTKDISSRCADLDFVMHEELGVPKAILNSVIFCHQEDASWPLDEGKKVKERFDE
IFDADKYSDCFDRLRKIRKEYATNIKLLEQGVAHLTEKKEELDKKKLDVVNTETRISEAE
LKISELSQELKPLTEKINAIETLQKNLLAFESKRDKIKTRLEQNKNVEQDLKDSIQSIYE
GSLMELQENITNYGATAETKQAELEDSYKKNFSFNKEEERIANEKTSNEVKYNKLILLES
QNQDKIDKRNVMIVETGKLAEIELDKIETNEEAANGIRTINEKIEELQNKLKEQKAASDL
EEKELQKHVDECRDALSRHKQKISNKESEIQTTKKEITKIQKQINDANKSKLKLETLEEK
LKTAEEDYEKAVNELNPEECQAEINRDEKLMEEHENELEQLSEKVTKLQKQSAKLKEKDM
IEESFKQKEKQLNVLKNKHRTAITELLGSMPEKNFAIAINKLDCEIRKELESMKKKITEK
QNEATRLETERRLARERLGERRGALAAAEDRVYAACGALPLPAALERAGAALDRLQEEQN
VLQSSMFIITKYKGQIKDNKCCPLCNRGFDTETEVTDLISQLTTQVLNVPAQLEKVTEEL
QKTSAKKDDLLSLRSLNDKITSLKETEIPELEKQLEDLDKQISGLSEEVEELSMSAAEPE
RRGAAARALLGDMPLLDRCIAELDKAAKDLEAIKAKCGDFVSDISLDEATNKQSELRQKI
SALRASARSAQTRLNAHNRRLQAAADRKNKLKEDMLNVQKKVQELCNLQETQKTMESNIE
KFTSEVKELQGGMEPLELALVEKEKIKTEAVKKNRSEIDMKNSYIVKVTNAYDKLRAIDL
EIRQHKERNLQREMDKITEANEKLLARQKQIMNDRDTLTKKIDSLKDELAKQAIYKRNLE
DNLKLRTAQKEIETCEKELADINEKLSGVNVEMISEKEPLIIQQTKIFREKAQTEGKLGE
LKERLKQNKLELKKSQNKDIEKKYREKFYELHVIKAIDKDIRDYSVALEKCLMEFHREKM
ENINLIIRSMWRKIYRGNDIDYIEIKTEGSVTADSERRKYDYRVIQCKNGVEIDMRGRCS
AGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDHENIKSLCSALGEIVQERMTQKNF
MFIIITHDKEFIESLGNIDKVTHYYEVSRNEEGKSRVKKIRFS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaattaaatctctggcagtaagaggaattaggagttttggaccagaggagtgt
gatgaacagcgtatatcgtttgaaaaacctctgactttaatattaggacagaatggttgt
ggcaaaactactattattgaatgcttacgatatgcaataactggtcagatgccgccggga
agccgcaatgaatgttttgtgcacgatgcaaaagtaaatagatccacggaggttatgggt
caagtcaagttgaagattatcaatgctaaagataaacaattagaagtctcaaggtccatg
agagttactgcctatcaaaacaagaaacctaagtttcagacattagattcatttctttca
gtagtagatgacaatggtaaaactaaggatatatcatcgagatgtgctgacttggatttt
gtgatgcatgaagagttaggtgtgccaaaagccattttgaattcagtgattttttgccac
caagaagatgccagttggccattagatgaaggaaaaaaagttaaggagaggtttgatgag
atatttgatgctgataagtacagtgattgttttgatcgccttcgaaaaataagaaaagaa
tatgcaactaatatcaaattattggaacaaggagtagctcacttaacagaaaaaaaagaa
gaattggacaagaaaaagctagatgttgtaaacactgagactcggatatctgaagctgag
cttaaaatatctgaattatctcaagaactaaaacctcttacagagaaaatcaacgctatt
gaaacattacagaaaaatctactagctttcgaatctaagagggataaaataaaaactaga
ttagaacaaaataagaatgtagaacaggatttgaaagattccattcaaagcatttatgaa
ggttcactgatggaactccaagaaaatataaccaactatggagcaactgctgagaccaaa
caggcagagttagaggattcatacaaaaaaaacttttcatttaacaaggaagaggaaaga
attgctaatgaaaaaacgtcaaatgaagtaaagtacaacaaactgatcttgctagaaagt
cagaatcaagataagattgataaaaggaatgtaatgattgttgaaactggaaaacttgct
gagattgaattggataaaatagaaacaaatgaggaagcagcaaatggaatacgcactata
aatgagaaaattgaagaattacaaaacaaactcaaggagcaaaaagcagcttctgatctt
gaagagaaggaacttcagaaacatgtggatgaatgtcgcgatgcactgtcacgtcacaaa
caaaaaatatccaataaagagtcagaaatacaaacaactaaaaaggaaataactaagata
caaaaacaaataaatgatgcaaataaatctaaactaaagttagagactttggaagaaaaa
cttaaaacagctgaggaagattatgagaaagcagttaatgaattgaaccccgaggagtgt
caagctgaaatcaatagagatgaaaaacttatggaggaacatgaaaacgaactggaacaa
cttagtgaaaaggttacaaaattacaaaaacaaagtgcaaagttaaaagaaaaggatatg
atagaagagtcgtttaaacaaaaagagaaacaattaaatgttttaaaaaataaacacaga
actgcaattacggaactacttggaagcatgcctgagaaaaactttgccatagcaataaat
aaactagactgtgagattagaaaagagttggagtcgatgaagaagaaaataacagaaaaa
caaaatgaggcgacccggctggagacggagcggcggctggcccgcgagcggctgggcgag
cggcgcggcgcgctggccgccgccgaggaccgcgtgtacgccgcctgcggcgcgctgccg
ctgcccgccgcgctcgagcgcgccggcgcggcgctggaccgcctgcaggaagaacaaaat
gtactccagtcgtcgatgttcattataacaaaatataaaggtcagataaaagataacaag
tgctgccctctgtgtaatcgtggatttgataccgaaactgaggttactgatcttatatct
cagttgacaacccaagttttgaatgtacccgctcaattggagaaagtcacagaggagctc
cagaagacatctgctaaaaaagatgacttattgagcttgaggtcgctgaacgataaaata
actagtctaaaagagactgaaataccggaactggaaaaacaacttgaggacttggataag
caaatatcgggcctatcagaggaggtggaagagctgtcaatgagtgcggcggagcccgag
aggcgcggcgcggcggcgagggcgctgcttggagacatgccgctgctcgaccgctgtatt
gccgagctcgacaaagctgccaaggacctagaagcgataaaggcaaagtgcggcgatttc
gtatcggacatatcactagacgaggccacgaacaaacagagcgagctccgccagaagatc
agcgcgttgcgggcgagcgcgcgctcggcgcagacgcggctcaacgcgcacaaccgccgc
ctgcaggccgccgcggacaggaagaacaagctgaaggaggacatgctcaacgtacagaaa
aaggtacaagaattgtgtaacttgcaagagacacaaaaaacaatggagtcaaatattgag
aaatttacatctgaagtgaaagagctccaaggtggaatggagcccttagaattagcactt
gtggaaaaggagaaaataaagactgaggctgtgaagaagaataggtcagaaatcgatatg
aagaacagttatatagttaaagtaacaaacgcatatgataagttgagggcaattgattta
gaaataagacagcataaagaacgaaacctccaaagggaaatggataaaataacagaagcc
aatgagaaattattagcgagacaaaaacaaatcatgaatgatcgagacactctcactaag
aagattgatagcttgaaagatgaattagccaagcaggcgatttacaaaagaaacttggaa
gataatttgaaactacgtacagcacaaaaagagatagagacttgtgaaaaagaattggca
gatataaatgagaagcttagtggagtaaatgtggaaatgatctcagaaaaggaacccctg
ataatacaacaaaccaaaatatttagggaaaaagcacaaacagagggtaaacttggagaa
ctaaaggaaagactaaaacaaaataaactggaactaaagaaatcacaaaataaggacatt
gaaaaaaaatatagagaaaaattttatgagctacatgttatcaaggcgatcgataaagat
atcagagactactctgttgccttggaaaaatgtctgatggaattccatagagaaaagatg
gaaaatatcaaccttattatcagatcaatgtggagaaaaatatatagaggtaatgacata
gattacatcgaaataaaaactgaaggtagtgtgaccgccgactctgaacgtcgtaaatat
gattacagagtgatccaatgcaagaatggagtcgagattgatatgcgagggcgttgtagc
gccggccaaaaggttttggcttgtctgataatcagattggctttggctgaaacattcagt
tccagatttggtatcttagccttagatgaaccaactactaatttagatcatgagaatatt
aaaagcttgtgttcagcactcggtgaaatagttcaagaaagaatgacacagaagaatttc
atgtttataataattacacacgacaaagaatttatcgaatctctaggtaatattgataaa
gttacacattattatgaagtttctagaaatgaggaaggaaagtctagggtgaaaaaaata
agattctcttaa
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