Melitaea cinxia (Glanville fritillary): 123656755
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Entry
123656755 CDS
T09237
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03020
RNA polymerase
mcix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123656755
09124 Replication and repair
03420 Nucleotide excision repair
123656755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcix03021
]
123656755
03400 DNA repair and recombination proteins [BR:
mcix03400
]
123656755
Enzymes [BR:
mcix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123656755
Transcription machinery [BR:
mcix03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123656755
DNA repair and recombination proteins [BR:
mcix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123656755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
123656755
NCBI-ProteinID:
XP_045448373
EnsemblRapid:
ENSMCXG00005010130
LinkDB
All DBs
Position
1:10927509..10941341
Genome browser
AA seq
1891 aa
AA seq
DB search
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKRANEDTQDKKIIITAERVYEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTIK
LSNKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIADLESEWEQLSKDREVLRQIF
PSGESKVVLPCNFRRMIWNVQKIFHINKRVTTDLSPIKVIQGVKDLLNKCVIVAGDDRLS
KQANENATLLFQCLVRSTLCTKFVSEDYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITDQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGGGMYFGVGTPSMT
PLMTPWSNQNTPGYGASVWSPGQVGSSMTPGPSFSPSGASDASGLSPAYSSSWSPQPGSP
GSPGAPLSPYASPAGASPSYSPTSPVYAAPSPSLTPTSPHYSPTSPSYSPTSPNYSPTSP
IYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSRSYSATSPSYSP
TSPSYSPTSPSYSPTSAAYSPTSPRYSPSSPSYSPTSPAYSPASLSYSPSSPNYTPTAPT
YSPTSPAFTPTSPVYSPTSPNYSPSSPKYSPSPNYSPTSPSLAGSPSSPQYSPKSPQYSP
TSTAYSPSSPQHPGSTQYSPSSPNYSPSSPNYSSPGYSPSSTKYSPTSPTYTSTSPNYSP
TSPAYSPSSAGPSYSPTSPNYPASPSHDDDD
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacgaacgattcgaaggcgcctttgcgccaagtaaaaagagtacaatttggt
atattatccccagatgagatccgacgaatgtcagtcactgaagggggcattcgcttccca
gaaactatggaaggtggaagacctaagcttggtgggcttatggacccacgacaaggggta
attgatagaagttccagatgtcagacttgtgcaggaaatatgacagaatgtcctggacac
tttggacatatagatttagccaaaccagtttttcacattggttttattactaaaacaata
aaagtcttaagatgtgtttgcttttattgttcaaaactgcttgttagcccgacaaaccca
aaaataaaagaagttgtaatgaaatcaaaaggtcaacctcgaaaaaggttgacgtacgtc
tatgatttatgtaagggtaaaaatatttgtgaggggggagaagacatggatataggaaaa
gagggagaggaaggaaagagagggtcaggccatgggggttgtggtcactaccaaccttcc
attagacgacagggtttagatttgaccgcagaatggaaacgtgctaatgaagatactcaa
gataagaaaataatcatcactgctgaacgagtttatgaaattttaaaacacattacagat
gaagagtcatttattttgggcatggaccccaaatttgcacgaccagactggatgattgta
acagttcttccagttccaccattagcagtaagacctgctgttgttatgtttggatccgcc
aagaaccaagatgacttgacccataaacttgcagatataattaaagcaaacaatgagtta
atgaggaatgaacagtctggtgctgctgctcatgtcttaactgataatattaggatgtta
cagtttcatgtggccacatttgtagataatgatatgcctggaatgccaaaagctatgcaa
aaatctgggaaacctctcaaagcaataaaagcacgtttaaagggtaaagaaggaagaatc
agaggaaatctaatgggaaaacgtgtggacttttctgctcggactgtcattacacccgac
cctaacctacgtattgaccaagtaggagtccccaggtccattgctcaaaatttaacattt
cctgaattagtaacaccattcaacatagataggatgcaagaattagttagacgtggtaat
gcacaatatccaggagctaaatacattgtacgagacaatggagaaagaatagatctacgt
ttccatcctaaaccatcagacttacatttgcaatatggatataaagtagaacgacatttg
agagacgatgacctggttattttcaacagacagcctacactacacaagatgagtatgatg
ggtcatagagtaaaagtattaccatggtcaacatttcgaatgaacttgagttgtacttcg
ccatacaatgctgattttgatggagatgaaatgaatttacatgtaccacaatccatggaa
actcgtgcagaagtagaaaatatacacataaccccacgtcagattataaccccacaagcc
aacaaacctgttatgggtattgtacaagatacattgactgctgtaagaaaaatgacaaaa
cgagatgtatttttgaccaaagagcaggtcatgaatttacttatgtttttgcccacatgg
gatggaaaaatacctcagccttgtattttaaaaccacagccactttggactggaaaacaa
atatttactctgatcattcctggaaatgttaatatggttcgtactcattccactcatccc
gacgaagaagatgatggaccatacaagtggatatcacctggggatacaaaagtagtagta
gaacatggcgagttgctcatgggtattttatgtaaaaagtctcttggtgcatctgctggt
tctttgctccacatttgcatgttagaactgggccatgaaactgctggacgtttctatggt
aatattcaaactgtgattaataattggcttttattagaaggacactcaattggtatcggc
gatactatcgctgatccgcaaacatatcaagaaattcagcgtgccatagtaaaagctaaa
gatgatgtcatagaggttattcaaaaagcgcacaatatggaattagagcctacacctggt
aacacactcagacagacattcgaaaatcaagtaaatcgtattttaaacgacgctcgtgac
aaaactggaggttctgcgaaaaaatctcttacagaatataacaatttaaaagctatggtg
gttgcaggttctaaaggttcaaatattaatatttctcaggttattgcctgtgtaggtcaa
caaaacgtagaaggaaaacgtattccgtttggcttccgtaaaagaacattgcctcatttc
attaaagacgattatggtcctgaatcaagaggtttcgtagaaaactcataccttgctggt
ttgacaccttccgaattttatttccacgctatggggggtcgtgagggtcttattgatact
gctgtaaaaaccgctgaaacgggttatattcaacgacgtttaataaaggctatggagtct
gttatggtacattacgatggcactgttcgtaactctgtaggacagttgattcagttgaga
tacggcgaagatggcttggcaggagaaacagtagaattccaaaatcttccgacaatcaaa
ctgtctaataaggcatttgaaaagaaatttaaatttgatccaaccaatgagagatatttg
aagagaattttcaatgaagatattataaaggagcttaccgagtcaggatatgttattgct
gatcttgaaagtgagtgggaacagttatccaaagatagagaagtactacgccaaattttc
cccagtggagaatctaaagttgtactaccctgcaatttcaggagaatgatttggaatgta
caaaaaattttccatatcaataaaagagtcacaactgatttaagtcccataaaagtgata
caaggtgttaaggatcttttaaataaatgtgttatagtagctggtgatgatcgcctgtct
aaacaagccaatgaaaatgctaccttactcttccagtgcttagtaaggtctacactttgc
acaaaatttgtttctgaagattatagactttcaagtgaagcttttgaatggctgattgga
gaaatagaaacacgtttccaacaagcgcaagttaatccaggtgaaatggttggagctctg
gctgctcaatcacttggagagcccgctactcaaatgacattaaacactttccactttgct
ggtgtgtcatctaaaaacgtaacacttggtgtaccgcgtctgaaagaaattatcaacatt
tcaaagaagccgaaagcgccttcactaaccgtttttcttaccggaggggcggctagagat
gcagagaaagctaaaaatgtgctttgtcgattggaacatactacattgcgaaaagttact
gcaaacacggccatttattatgatcctgaccctcaaaatacagtaattgcagaagatcaa
gaatttgttaatgtctactatgaaatgcctgattttgatcctaccaagatctctccgtgg
ttgctacgtattgaattagatcgtaagagaatgacggataagaaactgactatggaacaa
atcgcagaaaaaataaatgcaggatttggagatgatttgaattgcattttcaacgacgac
aatgctgaaaaactagtattacgaatccgaataatgaataatgaggagagcaaatttcaa
gataatgatgaggaaactgttgataaaatggaagatgacatgttccttagatgtattgaa
gcgaatatgttatctgatatgactttgcaaggtatagaagccatagcaaaagtgtacatg
cacttgccacaaacagaagctaaaaagcgaatcatcataactgatcaaggtgaattcaaa
gctattgcagaatggttgttagaaaccgatggtacatcgttaatgaaagtactctctgaa
cgtgacgtcgatccaatacgaacattcagtaacgacatctgcgaaatattccaagtgtta
ggtatagaagccgtacgtaagtcagttgaaaaggaaatgaatgctgtattgcagttctat
ggcttatacgtaaactatcgtcatctcgctctactttgtgatgtgatgactgcaaaaggt
catctcatggctattacccgccacggtataaatagacaagacactggtgctcttatgcgg
tgctccttcgaagaaacagtagacgtgctccttgacgccgcaagccacgctgaagtagat
cctatgaggggtgtatctgagaacataatcatgggtcaattaccgaggatgggaactggc
tgttttgacttattactcgacgccgaaaaatgtaaacatggaatggaaatgggtggtctc
ggtgttggtatgggtgttggaggtggtatgtactttggagttggcactccttcaatgacc
ccattgatgacaccatggtcaaatcaaaatactcctggatatggtgcatctgtttggtct
cctggtcaagttggtagtagcatgactcctgggccatctttctcaccatcaggagcctca
gatgcatcgggattgtcaccggcttacagtagttcatggtcccctcaacctggctcacct
ggatctccaggcgctcctctatcaccatatgcttcgcctgcaggagcatctccttcttat
tctccaactagtccagtctacgccgcaccgtcacctagtcttactcctacatctcctcat
tattcacctaccagcccttcctattcgccaacatctccaaattattccccgacgtctcct
atttactcaccgacttcgccaagttattcaccaacgtcaccaagttattcccctacatcg
ccttcgtattctccgacgtcccctagctattccccaacttcaccaagttattctccaact
agtccagcatattcaccaacgtctcgaagttattcagccacttctccgagttattcaccg
acgagtccgtcctattcaccgacgagtccgtcatattcacctactagtgcagcatattcg
ccaacatctccaagatattcgccttcttcacctagttattcaccaacaagcccagcgtac
agtccagcatctcttagttattctccatcttcaccaaattatacacccacagctcctact
tattcgcctactagcccagcatttaccccaacgtcaccagtatactcgccgacatctccg
aattactcgccgtcgtcacctaagtattcaccatctcctaactattctcctacttcaccg
tcactggcaggcagtcctagcagtccacaatattcaccgaaaagtccacaatattcccca
acaagcacggcatattctccttcatcgccccaacaccctggaagtacacagtattcgcca
tcctctccaaattattccccatcgtcaccaaactactcatcaccaggatattcaccttca
tcgactaagtattctcctacgtcgcctacttatacgtcaacatctccaaattattcacca
acatcaccagcttattcgccatcttcggctggtccatcatattctccaacctcaccaaac
tatccagcttcaccttcacatgacgacgatgattag
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integrated database retrieval system
