Melitaea cinxia (Glanville fritillary): 123658847
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Entry
123658847 CDS
T09237
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcix03041
]
123658847
Enzymes [BR:
mcix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123658847
Spliceosome [BR:
mcix03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123658847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
YTH
OB_NTP_bind
R3H
Helicase_C
Ank_2
DEAD
Ank
Ank_5
nSTAND3
AAA_19
Ank_4
AAA_22
HA2_N
AAA_25
T2SSE
AAA_14
UvrD-helicase
SRP54
PhoH
ATPase_2
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
123658847
NCBI-ProteinID:
XP_045450096
LinkDB
All DBs
Position
13:complement(14953689..14972848)
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AA seq
1357 aa
AA seq
DB search
MSSKKGKRNLGNKHFPIAESVSIALKIQLDKFLSDENETELKFPTFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYLTIYKRVGSTIIQNDAKLILDSNMRCSITELFNAFPITSKEKDD
LSCCPEKERSPQLANKTLGQLNNGVAQVPNTTYNPDLLKFREKLPVYEQRQDLINAITHN
QVIIVAGATGCGKTTQLPQLILDYCQENKQPARIYCTQPRRISAVSVAERVAYERMEKIG
QSVGYQIRLESRVSPRTVLTYCTNGVLLRTLMGGDTALTGVTHVLVDEVHERDKFSDFLL
VALRDALARLKDLKVLLMSATMDTQIFSRYFNNCPVITIPGRLHEVQRYYLEDILKITKY
STKRMLQVERELKAKLKSGQSYWSHLEGQKQNLEEVNKDEKEQLDPALQADMDEFLDECF
NEGSLDSFSQLLYMFVSEGVPASCAHSRCGRGALAAAAARGLSDVARQLLRIGADPNLKD
KSGKTPYDYAVENGHTECAKLLATFTHTEEAKNGQEEDTSADDFLLDVYNHAFSEELIDH
DLMLALVRHIHITMPKGSILIFLPGYDDIVTLRDLIQSCSDMNVMKYQIFTLHSNMQTLD
QKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESNGGVCSLQCVWTSR
ACCQQRAGRAGRTKPGHCFHMCSKRRFKTLPLTSVPEILRVPLQELCLHTKLLAPGNTPI
ADFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKMLLYACV
MKCLDPILTIVCSLANKEPFQISMNPENRKKGGMARKEFAADSYSDHMALLRAFQAWQTA
RANGTEKAFCAKNLICGATMEMIVGYRSQLLAQLRALCLVKARGSGDIKDVNLNSEKWHV
VKAVLVSGLYPSIARVDRDSCTLRTSKEVKVAFHPSSTLHRGGGVSGSQKSVQNLPTDWV
VFEEISRVGRFCFIRCNTLVTPLTVALFGGPLRLPAGALTQRANPPGLSSDSDSEADENN
SSPDTAVLTLDDWMAFTADASDAISVYYLRQKLCALVIRRMSNPAKSMTPLDEQILTTVV
HILGSEEKNVGLNQPSGIGQRPKPLTLDSPNWRMRVDEEQYRHENNKHYPQYGQTDYGNG
YYQNSYGYRNGQRPGWRSPLSPLAGAVAGPAAGPGAGPGVDRAMDDGIRYFVVKADDVHA
VEAAQAGAGFPFSPATAKKLQKAKQEGYRVVVFFSVASASKFVGAAAVGDMASLEWISGQ
HAPYHTVRHIVNSLTGGSRVAGARDGTELCAGAGRALITALAPRRRHPHQQHQQHQQHPQ
HQQHSQHSQHSQHSQHSQHSQHSHHQPRPIQKHSGDL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaagaagggtaagcgtaatttaggtaataagcactttccaatagctgagtct
gtgagtattgctctaaagatacagctggataaattcttaagtgatgaaaatgaaacggaa
cttaaatttccaacgtttctgtcggctcaagaacgcgggtttattcacgaaactgtcgcc
aaattgggtctgaagtccaaatcgcgcgggaaaggagtaaaccgatacttgacaatatac
aagagagttggttcgaccattatacagaatgatgctaagctcatactggactcaaacatg
cgttgtagtatcacagaattatttaatgcatttccaattacgagcaaagaaaaggatgac
ttaagctgctgccctgaaaaggagcgtagtccgcaattagcgaataaaactctagggcag
cttaataatggcgtggcacaggttcctaacacgacatataatcctgacttgctcaagttc
agggaaaagttaccagtttatgagcaacggcaagatttaataaatgccataacacacaat
caggtgataatagtggcaggtgcaacagggtgcggtaaaacgacccagttgcctcagctc
atactagactattgccaggagaacaagcaacctgctcggatatactgcacccagccccgg
aggatctcagccgtttctgttgctgaaagggtagcttatgaaagaatggaaaaaataggt
caatctgtcggctatcaaatcagattggaatcacgagtgagtccccgcaccgtactcact
tactgcacaaatggtgtgttgcttagaactcttatgggcggagatactgcactcactggt
gtgacccacgtgctggtggatgaggttcacgagcgagacaagttcagcgatttcctactg
gtggcgctgagggacgccctggcgcgcctcaaggacctcaaggtgttgctcatgtccgct
accatggacacgcagatcttctccagatacttcaacaactgccctgtaataaccatcccc
ggacgtctgcatgaggtccagcggtactacctcgaagatatcctcaagataaccaaatac
agcaccaagaggatgttgcaagtggaacgggagctgaaggccaagctcaaaagcggacag
agctactggtctcatcttgaggggcaaaagcaaaacttggaagaagttaataaggatgaa
aaagagcaattagatccggctctacaagctgatatggatgagttcttggatgagtgcttc
aacgagggtagtttggactcgttcagccagttgctgtacatgttcgtgtcggagggcgtg
ccggcctcgtgcgcgcactcgcgctgcggccgcggggcgctcgccgccgccgccgcgcgc
gggctttcggacgtcgcgcggcagctgctgcggatcggtgccgacccaaacttgaaagat
aaaagtggaaaaactccatacgactacgcagtcgaaaatggtcacacagaatgcgctaaa
cttttagcgacatttacgcacacggaggaagccaagaatggccaagaggaggacacttcc
gcagacgacttcctcctagacgtttataatcacgctttttctgaagagttaattgaccac
gacctcatgctagccctcgtgagacatatacatataaccatgcccaaaggcagcatccta
attttcctgccgggctatgacgacatcgtaactttaagagatctgatccagagttgttcg
gatatgaacgtaatgaaataccagatatttacgctacatagcaacatgcagacgttggac
cagaagaaagtgttcaaccccttacctaacgcgagaaaaattattatatcgacgaacatc
gcagagacatctataacgatcgatgacgtggtgtacgttgtggactcgtgcaaagttaag
gagaagtattatgagtcgaacggtggtgtgtgctcacttcagtgtgtgtggacgtcaagg
gcttgctgtcagcaaagggcgggccgcgccggtaggaccaaacccggacactgcttccac
atgtgttccaagcgaagattcaaaactctacctctaacctccgtaccagaaatattgaga
gttcctctacaagaattatgccttcacactaagctgctagcaccaggtaatactcccata
gcagattttctatcaaaagctctggaaccgccctcgttcttggcggtacggaacgcggtc
actttactcaagacgattggggcgttaacacccatggaagatttgacagagatcggtcaa
catctactggatctcaccgtcgaaccaaaattgggaaaaatgttgctttacgcgtgtgtc
atgaagtgccttgatccgattttaactattgtatgcagtttagcgaataaagaaccgttc
cagatatcaatgaacccggaaaacaggaagaagggtggaatggccaggaaagagtttgcc
gcagatagctactcggatcatatggccttgcttcgggcctttcaagcttggcagaccgcc
agagcgaacggtacagagaaagcattttgtgcgaaaaatttaatctgtggtgccacaatg
gaaatgattgttggctatagatctcaattattggcccaacttagggctttatgtctcgtt
aaagccagaggttccggcgacataaaggacgtgaatttgaactccgaaaagtggcacgta
gttaaagccgttttagtcagtggactctatccttctatagcgagggtagacagagattcg
tgtactctaagaacatctaaagaagtaaaagttgccttccatccgagctctacgctacac
cgtggcggcggcgtctcggggtcacaaaaatcggtacaaaacttgccgaccgattgggtc
gtatttgaagaaatatcgcgcgtgggacggttctgtttcatccgatgcaataccctagta
actccactaacggtggctctgttcggaggacctttaagacttccagcgggggctttaact
cagagagctaaccccccaggattgtcgagcgattcggacagcgaagccgatgaaaataac
tcgtcaccagacacggccgtcttaacacttgacgattggatggcgtttaccgccgatgcg
tctgacgctataagcgtttactatttaagacaaaagctctgcgccctcgttattcgtcgg
atgtcgaatccagcgaaatcgatgactcccctcgacgagcagatattgaccacagtggta
cacatacttggttcagaagagaaaaacgtaggtctgaaccaaccaagtggtatcggacag
aggccgaaacccctcaccctcgactcgcccaactggcgaatgcgagtagatgaagagcaa
tatcgccacgaaaacaataaacactacccgcagtacggacagactgattacgggaatgga
tactaccagaatagctacggttatagaaacggtcagaggccgggatggcggagtccactg
tcgccgctggccggtgcggtggccggtccggcggccgggccgggagccggaccgggtgtg
gaccgggctatggatgatggtattcgttacttcgtagtaaaggcggatgacgttcacgcc
gtagaggcagcgcaagccggcgctggcttccctttctcccccgcaacggccaagaagcta
cagaaggctaaacaggagggttaccgcgtggtggtgtttttctctgtggcgagtgcgtct
aaatttgtgggcgctgcggctgtgggagacatggcttcgctcgagtggatcagtggacaa
cacgccccctaccacacagtgaggcacatagtgaattcgctgacaggtggtagccgagtg
gctggtgcccgcgatggcacggagttatgtgccggggcgggtcgggctctaataacagcg
ctggccccacgtcgtcgccatccacaccaacaacaccaacaacaccaacaacacccacaa
caccaacagcactcccagcactcccagcactcccagcactcccaacactctcaacactct
caacactcccaccatcaaccgagacccattcaaaagcactccggcgacctgtag
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