Melitaea cinxia (Glanville fritillary): 123659870
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Entry
123659870 CDS
T09237
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcix04147
]
123659870
00535 Proteoglycans [BR:
mcix00535
]
123659870
00536 Glycosaminoglycan binding proteins [BR:
mcix00536
]
123659870
Exosome [BR:
mcix04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123659870
Proteoglycans [BR:
mcix00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123659870
Glycosaminoglycan binding proteins [BR:
mcix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123659870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
123659870
NCBI-ProteinID:
XP_045450991
LinkDB
All DBs
Position
14:5713566..5777563
Genome browser
AA seq
1167 aa
AA seq
DB search
MGCNNLYIWLAVVLSSTICSASDGIFGSKYPNDIPEYDLLHAIGVPFSNPKTQYFDEGLD
GFPAYGLKPGSDIKSPYRLFMPEKLYAEFSITATVRPANKDGGFLFSVVNPLETVVQLGV
QLIPSGPGLTNISLLYTDANIYALSQTIASFVVPSFAKKWSRFALKVTTTNVTLFLNCQE
FDTIVVKRNPPELVFDSASTLYVGQAGPLIRGAFHGAFQELKLYGSPSQAEVQCVNTFEE
DRSSEGDEIDIDNFLVDQEEGDAEGSGRYGTIPPFPPPPPGLDGYPLRLRGEKGERGPRG
PPGESIRGPPGPPGPPGPPGQPGTSTTIEMSGSGDDKLDIKQIFGENYASLGQCGCNSSV
LLSLLETAPELQGPPGPPGMVGADGRTGAPGIAGLPGVAGERGPMGPRGEKGDRGDEGPR
GLEGQPGPKGEPGVDGRPGSPGPAGPPGPPGSSDYSNFDSNWKPRQIYKESLFGSHDGAI
GRPGAPGPKGDAGQPGPIGLQGERGFPGPKGERGQTGQTGLKGDRGHPGPKGDRGLKGDR
GNPGFDGRPGLPGANGRGGEKGEKGERGTPGPPGPPILPTGLIGTEELELLTANQRLAAK
GDKGEKGEKGIRGNDGSPGFPGKDGKPGERGDIGPSGMPGIAGPPGSPGLKGDRGERGPP
GPVSITSASGSDIVTIKGDKGDSGMRGRRGRPGPPGPRGPQGLQGPPGLPGKSGEKGEIG
LPGWMGRPGTLGPPGVAGPVGPKGEKGDPGINILDLSLFKGEKGDRGNDGTPGVKGAQGP
PGPPGFAKPDPIQYVPGPPGPPGPPGPPGTPGISIVGPKGEPGVIGGPVHGLTKLYGGPA
YLASEPRTHYEEHNPNTNVPGAAVFPTTEEMLRLASSSPVGALAYVIEEQALFVKVNTGW
QYVMLGSLVTRSAPVTTTPAPPSPPMPAASLVHMPQISNLVENSPPLTPVGPSLRLAALN
EPLSGNMHGVRRADYACYRQARRAGLKGTFRAFLTSRIQNLDSTVRYSDRHLPVVNIQGD
VLFKSFSDIFDGNGGVIAGTPRIYSFSGKNIMTDSHWPQKLIWHGSHASGERALDTFCEE
WQNGEPTSRGMAASLYSHKLLSQERYTCNNHFAVLCIEATSHISVRRRRDTSRYNLTSLL
DDEDYLYNAEEYQQLLNEIFAQRFREN
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgggttgtaataacctgtacatctggttagcagttgtattgtcttctacaatatgttca
gccagcgatggtatctttggatcgaaatatccgaacgatattccggaatacgacttgctg
cacgccattggagttccgttcagcaatccaaagactcagtatttcgacgaaggcctcgat
gggttccctgcgtatggactcaaaccgggctccgatattaaatcaccgtataggcttttc
atgccagagaaattgtacgctgaattttcaataacagctacagtccggccggcaaacaaa
gatggtggatttctcttttccgtcgttaaccctttagaaactgtcgtccaattgggcgtc
caattaataccttctggtccgggactgacaaatatctctctcctatacacggatgctaat
atttacgctttgagtcaaactattgcttcgtttgtagttccgtcgtttgctaaaaaatgg
agtcgttttgcattgaaagtaacgaccactaatgtaacgttgtttctgaattgtcaagaa
tttgatacaattgtcgttaagagaaatccaccagagctggtatttgattctgcttcaacg
ttatatgttggacaagcggggccattaattagaggagcgttccatggtgcctttcaagaa
ctcaagctgtatggatcgccatctcaagctgaagtacaatgcgttaacacttttgaggaa
gacagaagcagtgaaggtgacgagatagatatagacaattttttggtggaccaagaagaa
ggcgatgcagagggatctggtcgttatggcactataccgccatttccaccgccaccgccc
ggtcttgacggatatcctctacgccttcgtggtgaaaaaggagaacgtggaccaaggggt
ccaccaggcgaatcgattaggggacctccaggacctccaggaccacccggtcccccagga
caaccagggacgtcaactactatagaaatgtctggatctggagacgacaaactcgatatc
aaacaaatattcggtgagaactacgcatcgttaggtcaatgtggttgcaactcaagcgtc
ttgctgtcactcctggaaaccgctccggaactccaaggaccccccggaccacctggcatg
gttggggctgatggacgaaccggtgcacctggaatcgctgggctaccaggcgtagctggt
gaaagagggccaatgggaccacgcggtgaaaaaggtgatcgaggggatgaaggaccacga
ggtctcgaaggtcaaccaggaccaaaaggtgagcctggcgtagatggtcgaccaggcagt
cctggcccagctggtccaccaggtccccctgggtcatctgactatagtaattttgattcg
aattggaagccaagacagatatataaggagtcgttattcgggtctcacgatggagctatt
ggcagacctggagcaccaggacctaaaggagatgcagggcaaccaggccctataggtctt
caaggggaacgaggttttccaggtccaaaaggagaaagaggtcaaacaggacaaacaggg
ttaaaaggagatcgtggacatcccggaccaaaaggtgatcgtgggttaaaaggtgatcga
ggtaatccagggtttgacggtcggcctggtctcccaggtgctaatggcagaggaggcgaa
aaaggagagaaaggcgaacgaggaacacctggaccacctggtccaccgatattaccaact
ggattaattggcacagaagaattagaactcctaaccgcaaatcaaagattagccgctaaa
ggtgacaaaggtgaaaagggtgaaaaaggaatccgtggaaatgacggtagtccaggattc
cctggtaaagatggaaaaccaggtgaaagaggtgatattggtccatctggaatgcctggt
atcgctggaccacctgggtccccaggacttaaaggtgatagaggtgaaagaggtccaccc
ggcccagtcagtataacgtctgcttctggttccgatatcgtaacaatcaagggtgataaa
ggagattctggcatgcgtggtagaagaggaaggcctggcccaccaggtccacgtgggcct
caaggtcttcaaggcccacccggacttcctggtaaatcgggtgagaagggtgaaatagga
ttacctggatggatgggtcggccagggacattgggaccgcctggagtagctggccccgta
ggaccaaaaggagagaagggtgatcctggaattaatatattagatctctcgttgttcaaa
ggagaaaagggagatcgaggaaacgatggtacgcctggtgtaaagggagcgcagggtcct
cctggccccccgggtttcgctaaacctgacccaatccaatacgtgcccggaccccctgga
ccgcctggtcctccagggcccccaggaacccctggtatatcaatagttggaccaaaaggt
gaacctggtgttattggtggaccagttcacggactgacaaaactatacggcggaccagct
tatcttgcaagtgaaccccgaacacattatgaagagcacaatccaaatacgaacgtgcct
ggagctgcagtatttccaacaacagaagaaatgttgaggctagcgtcatcaagtccggtg
ggtgcgttggcttacgtcatcgaagaacaagctctttttgtaaaagttaataccggctgg
caatacgttatgttggggtcgctcgtcacccggtccgcgccggtaaccacaaccccagcg
cccccgtctccgccgatgcccgcggccagcttggtccacatgccgcaaatatcaaactta
gtcgaaaactcaccaccgttgacaccagtgggaccaagtctccgcttagctgctcttaat
gagccactatctgggaacatgcacggtgtacgacgggctgattatgcctgctatcggcaa
gccaggcgcgctggtttaaaaggaacatttagagcttttcttactagcaggattcaaaac
ctcgattctactgtaagatattcggacagacatttgcccgtcgtgaatattcaaggagat
gtattatttaaatctttctcagacatatttgatggaaacggcggtgttatagcaggaaca
ccaaggatttatagctttagcggaaaaaatatcatgacggactcacactggccacaaaaa
ctcatatggcacggttcgcatgcaagtggtgaacgtgccctagacactttttgtgaagaa
tggcagaacggcgaaccaactagcagagggatggctgcttcgctgtattcccacaaattg
ctttcacaagagagatatacgtgcaataatcacttcgcagtactatgtatagaagcaacg
tctcacataagcgtacgaagaagaagagatacgtcaaggtacaatttaacatcgctatta
gacgacgaagattatttgtacaacgcagaagaatatcaacaattgcttaatgagatattt
gctcaacgttttagagaaaattag
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