Melitaea cinxia (Glanville fritillary): 123662432
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Entry
123662432 CDS
T09237
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03008
Ribosome biogenesis in eukaryotes
mcix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123662432
09123 Folding, sorting and degradation
03018 RNA degradation
123662432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcix03021
]
123662432
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123662432
03009 Ribosome biogenesis [BR:
mcix03009
]
123662432
03016 Transfer RNA biogenesis [BR:
mcix03016
]
123662432
Transcription machinery [BR:
mcix03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123662432
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123662432
Ribosome biogenesis [BR:
mcix03009
]
Eukaryotic type
Pre-60S particles
RNases
123662432
Transfer RNA biogenesis [BR:
mcix03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
123662432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
123662432
NCBI-ProteinID:
XP_045453231
LinkDB
All DBs
Position
18:1150806..1185971
Genome browser
AA seq
1007 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQRPTDVDGQLVYADSSLPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPPPKDEDEMMVAIFDCIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETQEKIEEVARIRSELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH
DRLNNDHGWKGVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTTPDAALVRSDPAFGNQDNFI
FVRLSVLREYLEKELQMPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR
LVTLYKKCVLFTRGWITDSGEVNLDRVQVIMDELGRVEDEIFRRRHQNEVSFKARERAKK
QQQQRVNFGLLENTQFAPTPLGAATRGVSNPRQEAADIRRAGMQEVAQQDTGPRGRKRSA
AEAGLDEDDDKHDEVRLWEEGFKERYYESKFDVARDNLEFRNRVALQYVRGLCWVLRYYY
QGCASWKWYFPYHYAPFASDFLNVHGLSTNFEKGTQPFRPLEQLMGVFPAASAQHVPKPW
AKLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDETRLFKALEPYYKDLSQAER
QRNTRGHDRLYVSPANASHAGLLALYPAGAELRRRLAADQRHPYRCQGVRGDVMLSADNV
CVGGQLASPVVGLAPVLDNRVVVVRYQDPQYPDDFVFPARRLHGALEPPRVLMAGDMSHQ
QNRNRMPQIGMSRQRSVASLEAAGHRMLGHSLPRPPYGRAPPPPYGRVAPPPPYGHVPPP
PQLAHAHDRSQSFGPYRSGYMPRQQYQSQGYNRPGNQSNQDGHGSNQSRYSSNQNRFGSN
QDRSGPHQDRTGPHQDRSGPHQDRFGSNQDRYGSNQDRYGSNQGYQQNRGGYNRNYPQNQ
SQGHSSVDKYRNRQRPMMNQPSQNQNQGEGGSNPRHNRITSHPYRRM
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcattcttccgttggctaagccgcaaatatccgagcgttattgtcgaa
tgtattgaacagaggccaaccgacgtagatggacagctcgtatacgcagattcgtcatta
ccaaatcccaatggggttgaatttgataatctttacttggacatgaacggtattattcat
ccatgtactcatcccgaagataaaccgcctccgaaggacgaggacgagatgatggtggct
atcttcgactgcatcgacagactattccgcatcgtgagacctaggaagctgttgtacatg
gctattgatggtgtggctcccagagctaaaatgaatcaacagcgctctcgacgattcaga
gcctcgaaggaaacacaagagaagatcgaggaggtagctcgcattcgatcagaactccaa
gcaaagggtgcttacttacccccagagaggcctaaggaagctcactttgactcgaactgt
atcacacctggtactcctttcatggatcgattgagcaagtgcttgcattattacatacat
gacagattgaacaatgaccatggatggaagggagttaaagtaatcttatcagatgctaat
gttcccggagagggggaacacaagataatggactacatcagacgacagagagctcagccg
gaccacgacccgaacacacagcacgtgttgtgcggcgccgacgctgatcttatcatgctg
gggctggcgacgcacgaacccaacttcaccatcatcagggaggagttcaagcccaacaag
cccaggccctgtgacgtctgtggtcaactaggtcatgagatgaaagaatgcactggaacg
actccggatgcagcgctagttcgctcagatccagctttcggcaatcaagacaactttatc
tttgtgagactgagtgtcttgcgggagtatcttgaaaaggagttacaaatgcccaacctg
ccgttcccctacgacttcgagcgtgccctggacgactgggtgttcatgtgcttcttcgtg
ggaaacgacttcctgccgcacctccccagcctggagatcagggagggcgccgtcgaccgc
ctcgtcaccttgtataagaagtgtgtcttgttcactaggggttggattacagactcaggc
gaggtgaacctagaccgggtgcaagtgataatggacgagctgggtcgcgtcgaagacgag
atcttcagacggagacaccagaacgaagtgagcttcaaggccagagagagagctaagaaa
caacagcagcagagagtcaactttggtctattggagaacacccagttcgcgccgacgccc
ttaggagcggccacgagaggtgtctccaacccccggcaagaggcagccgatatcagacgg
gctggcatgcaagaagtcgctcagcaagatacgggtccacgtggtcgcaagaggtcagct
gcagaggcgggtctagatgaagatgatgacaaacacgatgaggttcggctgtgggaagag
ggcttcaaggagcgctactacgagagcaagttcgacgtggcgcgggataacttggagttc
aggaaccgcgtggcgcttcagtacgttcgcgggctatgctgggtgctccgctactactac
cagggctgcgccagctggaaatggtacttcccctaccactacgcgcccttcgcctccgac
ttcctcaacgttcacggcctgtccaccaacttcgagaagggcacgcaacccttccgtccg
ctggagcagctaatgggtgtgttcccggccgccagcgcgcaacacgtgcccaagccctgg
gccaagctcatgagcgacccgttttcaccaatcattgacttctacccaacggacttcaag
atcgacttgaacggcaagaagttcgcctggcaaggcgtggcactgctgcctttcgtcgac
gagaccagactctttaaagctttggaaccctactacaaggatttgtcgcaggcagagagg
cagcgcaacacgcgcggccacgaccgcctgtacgtgtcgcccgccaacgccagccacgcc
ggcctgctggcgctgtaccccgcgggcgccgagctgcgccgccgcctggccgccgaccag
cgccacccctaccgctgccagggcgtgcgcggcgacgtcatgctcagcgccgacaacgtc
tgcgtcggggggcaactagcgtccccggtggtgggtctcgctccggtgctagacaatcgt
gtggtggtggtgcgctaccaggatccgcagtaccccgacgacttcgtgttccccgctcgg
cggctacacggagccctcgagccgcctcgtgtcctgatggcaggggacatgtcgcatcag
cagaacaggaataggatgccgcagatagggatgagccgccagcgcagcgtggcgtcgctg
gaggcggccggccaccgcatgctgggccactcgctgccccgcccgccctacggccgcgcg
ccgcccccgccctacggccgcgtggcgccgcccccgccctacggccacgtgccgccgccc
ccgcagctcgcgcacgcgcacgatcgctcacaatcgttcggtccgtaccgtagcgggtac
atgccgcgccagcaataccagagccaaggatataaccgtcccggtaaccaatcaaaccag
gatggacatggctcaaatcaaagcagatatagttcgaaccaaaacagattcggctcaaat
caggacagatccggcccacaccaggacagaaccggcccacaccaggacagatccggccca
caccaggacagattcggctcaaatcaggatagatatggttcaaaccaagacagatatggt
tcaaaccagggctaccaacagaaccgaggcggctacaacagaaactacccacaaaatcag
agtcaaggacactcttcagttgacaaatacagaaatcgacagagaccgatgatgaaccag
ccgagtcagaaccagaatcagggagaggggggttccaacccgagacacaatcgaattacc
tcgcatccgtatcgtagaatgtaa
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