Melitaea cinxia (Glanville fritillary): 123663743
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Entry
123663743 CDS
T09237
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03013
Nucleocytoplasmic transport
mcix03015
mRNA surveillance pathway
mcix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123663743
09122 Translation
03013 Nucleocytoplasmic transport
123663743
03015 mRNA surveillance pathway
123663743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123663743
03041 Spliceosome [BR:
mcix03041
]
123663743
Enzymes [BR:
mcix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123663743
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123663743
Spliceosome [BR:
mcix03041
]
Complex C
Other components
EJC/TREX
123663743
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123663743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123663743
NCBI-ProteinID:
XP_045454364
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All DBs
Position
20:complement(13773108..13774732)
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGTTEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEDVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgacgatcttctcgactatgaagatgaggagcaagccgatcaacaaacc
gctgacggaacaaccgaagcggcgccaaaaaaagaggttaagggatcttatgtatcgatt
cacagctcaggtttcagagatttcctactgaaacctgaaatcttacgagccatcgtcgac
tgcggtttcgagcatccatcggaagtgcaacatgagtgcatcccgcaagctgttctcggt
atggatatcttatgtcaagctaagtctggtatggggaaaaccgcggttttcgtgttggcg
acgctgcagcaactggagccttccgaaaatcacgtctacgtactcgtaatgtgccatacg
agagagttagcattccagatcagcaaagagtatgagcgtttctccaagtatatggccggc
gtcagagtctcagtattcttcggtgggatgccgattcaaaaagacgaggacgtactgaaa
actgcatgcccccacatcgtagtaggaaccccgggtcgcattttagcattagtaaacagt
aagaaattgaatcttaaacacttaaagcactttattctggacgagtgcgacaagatgctg
gagtcacttgacatgagacgtgacgtgcaggagattttccgcaacactccgcatgggaag
caagtgatgatgttttctgccaccttgagcaaggagatcaggccggtgtgcaagaaattc
atgcaggaccctatggaagtgtatgttgacgatgaagcaaaactgacattgcacggtttg
caacaacattatgtcaagctcaaggagaacgagaaaaataagaagctgttcgagctcttg
gatgttctagaatttaatcaagtagtgatatttgtaaagtcagttcaaagatgcatagca
ctcgctcaacttctaacggaccagaacttcccagctataggtattcacagaaatatgaca
caagatgaacgcctttcccgctatcaacagttcaaggatttccaaaaaaggatattagta
gctacaaatctttttggcagaggaatggacatagaacgagtcaatattgtcttcaactac
gatatgccagaggactcggacacgtacctacacagagtggctagggctggtagatttggt
accaaaggcctggccataacaatggtatctgatgagaacgacgctaagatcttaaatgaa
gtacaggaccgtttcgacgtcaacataactgagctacctgaagaaatcgaattatcaact
tatattgaaggccgataa
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