Melitaea cinxia (Glanville fritillary): 123664259
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Entry
123664259 CDS
T09237
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123664259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcix03400
]
123664259
DNA repair and recombination proteins [BR:
mcix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123664259
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
123664259
NCBI-ProteinID:
XP_045454809
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Position
21:complement(5929917..5952370)
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AA seq
1181 aa
AA seq
DB search
MSKRNSTPASNTLFNYFTKTPPSNKKPKQNCDESNNKLNNSSNNAKVENKKRERIPTPSP
EPHKNASDSEEEVAISVKKRKRIRLNPIDSDDSDVENKVDNKLEKPKGEESMKKKLQESF
KYEPNESPKSDKTKRVISHNVEEDEVQELPHCLSPGDREVQPFLGHRVASSSPAETAERP
ALPGGMRLAAQPKKEEISPHDSPIIANEGNWTHCKLKWLKPENIRDAMKRRPDHPDYDKT
TLFVPAEFMKQQTPAHKQWWEIKSMHFDSVLFFKVGKFYELYHMDAAVGVNELGFSYMKG
EFAHSGFPESAYSRMASTLVSKGYKVVRVEQTETPEMMQERCKSSGLTSKTDKVVRREVC
QVSVRGARALGPQDAAPALPAAEHMLAVAEEESNGCSTYGICFIDTTIGQFHLGQFKDDK
HSSRLLTTLAHYPPALIIYDRKLTTARTSKLLSTHCHNARREHTAMWTPEKTLKILAEKY
YRTNVDGDWPDGLKPFLHEGDALGLTPASNCYLAVKALGGCVSYLTDCLLDIQILGMSLF
EEYSPPDVLNSTLLLEDKVENEWKGGNTMVLDAITLRNLRIVLDEGCLYDKLNYCSTPMG
KRLLYQWVCSPSCNLAVIKERQEAVKTLFENQELCQDAKNILTALPDLERLLAKIHALGN
LKKSQNHPDSRAIFYEEKTYSKRKVLDFISVLNGFTSVLKLSELFSDIESVLLRHLTQFN
PVGRFPDYRETLKFFKASFNQQEAEKEGRILPGTGVDREYDDILQVIKDLEDELKQYLVK
QEKYFKCRINYVGTDKKRYQLEIPQNAAAKAGPEYHLEGARKGFKKFSTDETKDFLARMM
AAEEQKSNVLKDLSRRIFEKFSSSYNQWETATKCLATLDILLALTEFARQQSGDICLPQI
TFEKNQEPYLNITEGRHPCILLDDFIPNSTVLGGKGGEIFQGGEGAARRLLLLTGPNMGG
KSTLMRQVGLLSVLAHMGSYVPAQECSMSLIDRIFTRLGASDDILSGQSTFLVEMNETAA
IVKHATLHSLVLLDELGRGTSTYDGTAIASGVCVELAARGCRTVFSTHYHSLVRHLAAHP
AVLLAHMACMVETEESAEGEGEGEVPEESITFLYKLSAGACPKSYGFNAARLAGVPRDVT
ARARLIARRIELEATCVRAARDLCKADSAQHVRKLLAALNI
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgtaatagtactccagcttctaatacgttattcaactattttactaaaaca
ccgccgagtaacaagaagcctaaacagaattgcgatgaaagtaataataaattgaataat
tcttcaaataatgcaaaagtagaaaataaaaaacgcgaaagaataccaactccgtcacca
gaaccacacaagaatgccagtgacagtgaagaggaagtagccatttctgttaagaaacga
aagagaattagattaaatcctatagattctgatgattccgatgttgaaaataaagtagat
aacaaacttgagaagcctaaaggtgaggagtctatgaagaagaaattgcaggaaagtttc
aaatatgaaccaaatgaatcacccaaaagtgataaaaccaaacgagtcatatcacacaat
gtggaggaagatgaggtccaggaactgccccactgtctgagtccgggcgaccgtgaggtc
cagcccttcctcggccaccgggtcgcatctagcagccccgcagaaactgcagagcgccca
gcgctacccggtggcatgcggcttgcggcacaaccaaaaaaagaagagatctcacctcat
gatagccccattatagcaaacgagggtaactggactcattgcaaattaaagtggttaaaa
ccagaaaacataagggatgcgatgaaacgtaggccggaccatccggactatgacaagact
acactctttgtacctgcagaattcatgaaacaacagactccggctcataagcagtggtgg
gaaataaagtcaatgcatttcgacagtgtgttgttttttaaagttggtaaattctacgag
ttatatcatatggatgcagcagtaggtgtcaacgaacttggcttttcatatatgaagggt
gaatttgcacattcgggttttccagaaagtgcgtactcgcgcatggcatcaactttggta
tccaaaggttacaaagtagtgcgagttgagcaaactgaaacaccggaaatgatgcaagag
aggtgtaaaagcagcgggctgacgagcaaaaccgacaaggtggtgagacgcgaggtgtgc
caggtgagcgtgcggggcgcgcgcgcgctgggcccgcaggacgccgcgcccgcgctgccc
gccgcggagcacatgctggccgtcgccgaggaggaaagcaatggttgcagtacatacgga
atctgcttcatagatacgacgataggacagtttcacttgggacagtttaaagacgacaag
cattcgtcgagactactcactacattggcacattacccaccagctttgataatctacgat
cgcaaattgacaacagcacgaacatctaaactgttgtcaacacattgtcacaatgcgaga
cgcgaacacaccgctatgtggacaccggaaaagacattgaaaatacttgccgaaaaatat
tatagaaccaatgttgatggggactggccagatggacttaaaccatttttacatgaaggt
gatgctcttggactgacaccagctagcaactgttacttagcagtgaaagcactcggaggc
tgtgtttcttacttaactgactgtttactggacatccaaattcttggcatgtcattattt
gaagaatattcaccgcctgatgtactcaatagcacattattactagaagataaggttgaa
aatgaatggaaaggtggaaatacaatggtgctagacgctataacattgaggaacttgaga
atagtcctagatgagggatgtttatatgataagttgaactattgcagtactcctatggga
aagagattactttaccaatgggtttgttctccgagttgtaacttggctgtgattaaagaa
agacaagaggcagtaaaaactttgtttgaaaatcaagaactgtgccaagatgcaaaaaat
atattgacagctttgcctgatttggagagactcttagctaaaattcatgccctgggcaat
cttaaaaagtctcaaaaccatcctgactcccgagctatattttatgaagagaagacgtat
tcaaagagaaaagtattagattttatatcggtcttgaacggatttacttctgttctcaag
ttatcagaattattttctgacatagaatctgttttactgaggcatctgactcaatttaat
cctgttggaaggtttcctgattacagagagacgttgaagttctttaaggcgtcatttaat
caacaagaagctgagaaagaaggtcgtatattgccggggactggcgttgatcgcgagtac
gatgatatcctgcaagtgataaaggacttagaagatgaactaaagcaatatttagttaaa
caggagaaatactttaaatgcaggataaattacgtaggcacggataaaaaacgttatcaa
ttagaaataccgcagaacgccgcagctaaagctggacctgaatatcacttagaaggagca
aggaaagggtttaaaaagttttctactgacgaaacaaaagatttcctagcacgaatgatg
gcagcagaggagcagaaaagtaatgtattgaaagatctaagtcgtcgaatattcgagaag
ttctcatcaagttacaatcaatgggaaacggctaccaaatgccttgccacattggatata
ttgctggctttaactgagttcgcgagacaacaaagcggggatatatgcttgccacaaatt
acctttgaaaagaatcaagagccatacctcaacataaccgaaggtcggcacccttgcatc
ctactcgacgatttcatccccaactcgacagtgttggggggtaaagggggtgaaattttt
caggggggagagggagcagcgcgtcgactacttctcttaacgggacccaacatgggcggc
aaatccactctcatgaggcaagtcggcctgctgtccgtattggcacacatgggcagttac
gtaccagcgcaagaatgcagtatgagtctaattgaccgtatctttacaaggttaggcgct
tctgatgatatattgtctgggcaatccaccttcctagtggaaatgaacgaaacggcagct
atagtgaaacatgcgactttacactctctagttttgttagatgagttaggtcgaggaacg
tcaacatatgacgggaccgccatcgcatcgggcgtgtgtgtggagctggcggcgcgcggc
tgccgcaccgtgttctccacgcactaccactcgctcgtgcgccacctcgccgcgcacccc
gccgtgctgctggcgcacatggcgtgcatggtggaaaccgaggaaagtgcggagggagag
ggcgagggtgaagtacccgaagagagtatcacgttcctgtacaagctgtcggccggcgcg
tgcccgaagtcgtacggttttaacgcggcccggctggcgggtgtgcctcgtgacgtcact
gctcgcgcgcgtctcattgctcgccgtatcgagctggaggccacgtgcgtgcgcgctgct
agagacctctgcaaggccgatagtgcccaacacgtgcggaagctactcgctgcgttaaat
atttaa
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