Melitaea cinxia (Glanville fritillary): 123669570
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Entry
123669570 CDS
T09237
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123669570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123669570
03041 Spliceosome [BR:
mcix03041
]
123669570
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123669570
Spliceosome [BR:
mcix03041
]
Complex B
Other components
Prp19-related factors
123669570
Complex C
123669570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_12
PPR
Mad3_BUB1_I
ARM_TT21_C
NRDE-2
ARM_TT21
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
123669570
NCBI-ProteinID:
XP_045459127
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All DBs
Position
3:14933458..14936477
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AA seq
844 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKNEINMIYERALKEL
PGSFKLWYNYLKLRRYQIRGRCVTDPAYDDVNNCFERSLVFMHKMPRIWMDYCTFLTDQW
KITSTRRAFDSALRALPITQHHRIWPLYLKFLKKHDIPETAVRVFRRYLKLCPEDTEEYI
DYLISIEKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEESIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKANPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIDDARLIFEKATQ
VNYAKVDDLASVWCEWTEMEIKHENYEEALKLMQRATVLPSRKVAYHDDKETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLENCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERAATAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDEK
AREMCIRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NILFVRGETQGLKESGDKVVNPDEIDIDEEESDNSGEDDEEEVAPVQKKDIPAAVFGGLL
QEKE
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgccgttacttgatggaaaagaaatagacatattttttagtgaagaggatttaccatat
gaagaagaaatattaagaaatcctttttcagtaaaacactggctcaggtacatcgaacat
aaaaaagctgcacctaaaaatgaaattaatatgatatatgagagagcactcaaggagttg
ccaggctcgttcaaactgtggtataattacttgaaactgagaaggtatcaaatacgcggt
cgctgtgtaactgaccctgcttatgatgatgttaataattgttttgaaagatctttagtg
tttatgcacaaaatgcctaggatttggatggattattgtacctttttgactgatcaatgg
aaaattactagtacaagaagagcatttgatagtgctttaagagcattgcctattactcaa
caccacagaatttggccactttatcttaaatttttaaagaaacatgatatccccgagaca
gcagttagagtatttagaaggtatctaaaattatgtcctgaagacacagaagaatatatt
gactacttaatatcaatagaaaagcttgatgaagcagctgttaaattggcacagcttgta
aataatgagaattttcagtcaaagcatggaaaatccaaccatcaactatggaatgaatta
tgtgaacttatatctaaaaatccagataaaattcactcactgaatgttgatgctataata
agaggtggacttcgtcgctacacagatcaactaggccacctttggaattcattagctgac
tattatgtgagaagtggtttatttgaaagagcaagagatatttatgaggaatctattcaa
actgttactacagtgagagattttacgcaggtttttgatgcttatgctcaatttgaagaa
ctcagtttgagcaaaaaaatggaagaagttgctaaaaaagcaaatccaactgaagatgat
gatattgacttagaattgagacttgctaggtttgaatatttaatggaaagaagattactt
cttcttaattcagttcttttgagacaaaatccacataatgtggctgaatggcataaaaga
gtaaagctctatgagggaaaacctcatgaaataattgatacatacactgaagctgttcaa
actgttgatcctaagttagcagtaggaaagttatatactttatgggtgggttttgctaag
ttttatgaaagtaatgatcaaattgatgatgcaagactgatttttgaaaaagcaactcaa
gtaaattatgctaaagtggatgatctggcatctgtttggtgtgaatggacagagatggaa
atcaaacacgagaattatgaagaagccctcaaactgatgcaaagagcaactgttttacct
agtagaaaagtagcttatcatgatgacaaagaaacggtacagatgcgtctttataaatct
cttaaagtatggtctatgtatgctgacttagaagaaagttttggtacctacaaatcctgt
aaagctgtttatgaccacattattgatttaaaaatagcaacaccacaaattattattaac
tatgggttattcttagaggaacacaattattttgaagaagcttttagggcatatgaaaag
ggtatagcactttttaaatggccaaatgtatatgatatttggaatacatatttgactaag
tttttaaaaagatatggaggatcaaaacttgaaagggctagggatttatttgaacaatgt
ttagaaaactgtcctcctgaatttgcaaaatcaatattcttactatatgcaaaattagaa
gaagaacatggtttagccagacatgcaatgtctgtatatgaaagagctgctacggcagtt
ctaccagagcaaatgttcgaaatgtttaacatttacattaaaaaagctgcggagatttat
ggtgtgccaaaaaccagacaaatatacgaaaaggctattgagactcttccagatgaaaaa
gctagagaaatgtgtatacgattttcggaaatggaaacacgacttggagaaatagacaga
gcccgagctatttacgcacattgtagccaaatgtgtgacccacgtattacagctgatttt
tggaacacttggaaagaatttgaagttagacatggaaatgaggacacaatgcgtgaaatg
cttcgaataaagagaagtgtacaagctacatacaatacccaagtgaatatgatgtcagct
caaatgttaagctcagcagcgcaagctgctggtacaatatcagatctagcacctggaatg
aaggatggcatgagaatgctagaggctaaagctgcagaaatggcagtccaaagcaaaggt
aatattctttttgttagaggtgaaacgcaaggtcttaaagagagtggtgataaggttgtt
aatcctgatgagattgatattgatgaagaagaatcagacaacagtggagaagacgatgag
gaagaagtcgcccctgttcaaaaaaaagacatacctgcagcagtttttgggggtttactt
caagaaaaagaataa
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