Methanothrix soehngenii: MCON_0829
Help
Entry
MCON_0829 CDS
T01468
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mcj
Methanothrix soehngenii
Pathway
mcj04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
MCON_0829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcj03019
]
MCON_0829
03009 Ribosome biogenesis [BR:
mcj03009
]
MCON_0829
04131 Membrane trafficking [BR:
mcj04131
]
MCON_0829
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcj04147
]
MCON_0829
Messenger RNA biogenesis [BR:
mcj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
MCON_0829
Ribosome biogenesis [BR:
mcj03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
MCON_0829
Membrane trafficking [BR:
mcj04131
]
SNARE
SNARE associated proteins
Others
MCON_0829
Autophagy
Aggrephagy
Other aggrephagy associated proteins
MCON_0829
Exosome [BR:
mcj04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MCON_0829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
RuvB_N
AAA_22
AAA_2
AAA_5
TIP49
CDC48_2
AAA_14
AAA_33
NPHP3_N
Mg_chelatase
IstB_IS21
AAA_28
nSTAND3
AAA_24
RNA_helicase
Sigma54_activat
AAA_18
AAA_7
ABC_tran
NACHT
Parvo_NS1
ATPase_2
NB-ARC
DUF815
AAA_lid_PRS2_C
AAA_30
Zeta_toxin
TsaE
AAA_25
AAA_3
AAA_17
AAA_11
ORC-CDC6-like
ATPase
SLFN-g3_helicase
ResIII
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
AEB67618
UniProt:
F4BYB3
LinkDB
All DBs
Position
complement(727751..730027)
Genome browser
AA seq
758 aa
AA seq
DB search
MTEGETVRLKASEANQGDVGKGIVRMGDEFMERIGIRPLDVVEIIGSRPTAALAVSAYTQ
DQGIDMIRMDGLIRSNAGTSIGQYVEVKRATWEEAKHVTLAPVTQGMQIFAPGDVLTKVF
NGRPLLRGDVISTTSVRKPPTDSMGRETMFEEIFRGFLGAQAFGLGEIKLRVVSTSPGGI
VKITEGTDIELLPQAVETPERSVPSVVYEDVGGLKPVITKVREMIELPLKHPELFDRLGI
DPPKGVLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESEKALRDLFEEAEK
NTPAIIFLDELDSIAPKRGDVTGEVERRVVAQLLSLMDGLKERKNVIVIGSTNRPEALDM
ALRRPGRFDREIELGVPDMEGRLEIFQIHTRGMPLHEDVVLEDYAIETYGFVGADIAAVS
REAAMNALRRILPQIDLDEPTIPKEILDRLIVQKSDFEAALREIQPSAMREILVEVPNVS
WEDIGGLERVKDLMVEAVEWPLRNAESFQRLGIDAPKGILLYGPPGTGKTMLAKAVANES
EANFITVKGSALLSKWYGESEKRVEEIFRKARQVAPSIIFLDELDALVPVRGGAMGEPHV
TERIVNQLLSEIDGLEELHGVVVIGATNRPDIIDPALLRPGRFDELILVPVPDRESRRKI
FQVHLKKSPLADDIDVEELLEQTDQYTGADIASLVRKAGRLALREDMAATRISQKHFLAA
LEEIGPSVTADTMKYYSSMARELRKKASREVERADIYA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaggagaaaccgttaggctgaaggcatctgaggccaatcagggcgatgtagga
aagggcattgtcaggatgggcgacgagttcatggaacgaatcggcatccgtcccctggat
gtagtggagataatcggatcgcgacccacagctgctctggccgtgagcgcctacactcag
gaccagggcatcgacatgatcagaatggacggtctaattcgatccaatgccggaacaagc
atcggtcagtatgtagaggtcaagagggcgacctgggaagaggccaagcatgtaacgctg
gcccccgtcacccagggcatgcagatcttcgccccgggcgatgtcctcaccaaggtcttc
aacggccgaccgctattaagaggcgatgtcatctccaccaccagcgtgagaaagcccccc
accgattccatgggcagggagaccatgttcgaggagatcttccggggctttcttggtgct
caggcctttggcctgggggagatcaagctccgggtggtctccaccagcccgggcggaatc
gtcaagatcaccgaggggacggacatagagctcctgccccaggcggtggagacgcctgaa
cgctccgtgccctcagtggtctacgaggacgtcggcggcctcaagccggtgataaccaag
gtccgggagatgattgagcttccgctgaagcatccagagctcttcgaccgcctgggcatc
gatccgcccaaaggagtgctgctgcacggcccgcccggcacgggaaagaccatgctggcc
aaggcagtggccaatgagagcgacgcctacttcataagcatcaacggcccggagatcatg
tccaagtactatggggagagcgagaaagccctcagagacctgttcgaggaggcggagaag
aacactcccgccatcatcttcttagacgagctggactccatcgcccccaagagaggagat
gtcactggagaggtggaacggagggtggtagctcagctcttatctctcatggacgggctg
aaggagaggaagaacgtcatagtcatcggctcaaccaaccgtcccgaggccctggacatg
gcactgcgccggccgggaaggttcgaccgggagatcgagctgggcgttccggatatggaa
ggaaggctggagatcttccagatccatacccggggcatgcccctgcacgaggacgtggtc
ctggaggactatgcaatagagacctacggcttcgtgggagcggacatcgctgcggtcagc
cgtgaggcggcgatgaacgccctgcggcgtatcctgccacagatcgatctggacgagccc
accattcccaaggagatcttggaccggctcatagtgcagaagagcgacttcgaggccgcc
ctgcgggagattcagccctcggcgatgagagagatcctggtggaggtccccaatgtgagc
tgggaggacataggtggcctggagagggtcaaggatctgatggtggaagcagttgaatgg
ccgctgcgcaatgcggaaagcttccagcgcctgggcattgatgcccccaagggaatcctg
ctctacggcccgccgggcacgggaaagaccatgctggcaaaagcggtggccaatgagagc
gaggcgaacttcataaccgtcaaagggagcgcactgctgtccaagtggtacggagagagc
gagaagagagtagaagagatattcaggaaggcgaggcaggttgctccttccatcatattc
ttagacgagctggatgccttggtccccgtcagagggggagcgatgggcgagccccatgtc
accgagaggatagtcaaccagcttctaagcgagatagacggcctggaggagctgcacgga
gtggtggtgatcggagcgaccaaccggccggatatcatcgatcctgctcttctcaggccg
ggaaggttcgatgagctgatactggtgcccgtgccggaccgcgagtcccggcgcaagatc
ttccaggtccatctgaaaaagtcgcccctggcagatgatatcgacgtcgaggagctgctc
gagcagactgatcagtatacgggcgcagacatcgcttctctggtcagaaaggccgggcgc
ctggccctcagggaggatatggccgccaccaggatcagccagaagcatttccttgccgcc
ttagaggagattgggccctcggtgactgcggatacgatgaaatactattcatcaatggcc
agggagctgcgcaagaaggcctccagagaggtagagagagctgatatatacgcttga
DBGET
integrated database retrieval system
