Methanothrix soehngenii: MCON_1252
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Entry
MCON_1252 CDS
T01468
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mcj
Methanothrix soehngenii
Pathway
mcj04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
MCON_1252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcj03019
]
MCON_1252
03009 Ribosome biogenesis [BR:
mcj03009
]
MCON_1252
04131 Membrane trafficking [BR:
mcj04131
]
MCON_1252
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcj04147
]
MCON_1252
Messenger RNA biogenesis [BR:
mcj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
MCON_1252
Ribosome biogenesis [BR:
mcj03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
MCON_1252
Membrane trafficking [BR:
mcj04131
]
SNARE
SNARE associated proteins
Others
MCON_1252
Autophagy
Aggrephagy
Other aggrephagy associated proteins
MCON_1252
Exosome [BR:
mcj04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MCON_1252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
TIP49
AAA_22
AAA_2
AAA_14
AAA_33
AAA_18
nSTAND3
Mg_chelatase
AAA_28
AAA_7
AAA_17
Parvo_NS1
IstB_IS21
NPHP3_N
RNA_helicase
AAA_25
ATPase
Sigma54_activat
Zeta_toxin
AAA_24
ABC_tran
ATPase_2
DUF815
AAA_19
TsaE
SLFN-g3_helicase
AAA_3
NB-ARC
Sigma54_activ_2
IPT
ATP-synt_ab
AAA_11
AAA_lid_PRS2_C
Cytidylate_kin2
Vps4_C
PEPcase_2
Motif
Other DBs
NCBI-ProteinID:
AEB67959
UniProt:
F4C068
LinkDB
All DBs
Position
1073082..1075295
Genome browser
AA seq
737 aa
AA seq
DB search
MREFKDIILKVAKAYPNDSARGIARLDPNALLTLRLSPGDIIEIEGKRLTAAKVWRADRQ
DWSQDYIRIDGFIRQNAGVGIGDKVKIRKAKFAEAQRIVLAPPSGSHMHYGDEAADMIRR
QTLKRPVVAGDILPIMSSGTHPFVGRMEPVPLVVTETHPDNVVVVCERTEIVLLEKPAKS
VRSVKATGITYENVGGLGSEVQRVREMIELPMKHPEIFQKLGIEPPKGVLLYGPPGTGKT
LIAKAVANESGANFISIAGPEIMSKYYGESEQRLREIFEEAQKSAPSIIFIDEIDSIAPK
RGEVTGEVERRVVAQLLAMMDGLKERGQVVVIGATNREEAIDPALRRPGRFDREIEVGVP
DREGRIEILQIHMHSMPVADDVNLEGLADRMHGFVGADVNALCKEAAMKALRRYLPDLTS
EDEIPQEIIDQMQVMGADFEEALKEIEPSAMREVLVEVPRVNWNDMGGLGALKQELIESI
EWPIKQPEKFQKMGIRPPKGILLYGPPGTGKTMIAQAVANETNANFISIRGPQMLSKWVG
ESEKAIREIFRKARQVSPAIIFFDELDSIAPMRGMDEGGRVMERVVNQLLAELDGLEALK
DVVVIAATNRPDILDPALLRSGRFDRMLLVGPPDRQGRHEILKIHASRTPKGEDVSLEEL
AELTDGYVGSDLDNLCREAAMLALREGLDRVEMRHYREALKKVRPSVEEHMLSYYERIGE
RFKGGIKVEPASLAGYR
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgaattcaaggatataattctgaaagtggccaaagcctatcccaacgactccgcc
cggggcatcgcccgcctggaccccaatgcccttctaaccctgaggctcagtccgggtgac
atcatcgagattgaggggaagaggcttaccgcagccaaggtctggcgcgccgaccggcag
gattggtctcaggattatataagaatagacggcttcatccgccagaacgccggcgttggc
atcggggacaaggtgaagatccgcaaggccaagttcgccgaggcgcagaggatcgtcctc
gctcctccttccggatcgcatatgcactatggggatgaggcagctgatatgatccgccgc
cagacgctcaagcggccggtggtggcgggagatatacttcccatcatgagctccggcacc
catccctttgtaggccggatggaacccgtgcctttagtggtaactgagacccatcccgat
aatgtggtggtggtctgcgagaggacggagatcgttctcctggagaagccggccaagagc
gtccgatcggtcaaagccacgggaatcacctatgagaatgtgggcggcctgggttcagag
gtgcaacgggtaagagagatgatcgagctgcccatgaagcatcctgagatcttccagaag
cttggcattgagcctcccaaaggtgttctgctctatggcccgccgggcacgggaaagacc
ctcatcgccaaagcagtggccaatgagagtggagctaacttcatctccattgccgggccg
gagatcatgtccaaatactatggagagagcgagcagaggctgagggagatcttcgaggag
gcgcaaaagtccgctccatccatcatattcatagacgagatcgactccattgcccctaag
cggggtgaggttacaggggaggtggagagaagagtggtggcccagctcctggccatgatg
gatggcctgaaagagagaggccaggtggttgtgatcggagccaccaaccgggaagaggcc
attgatcccgctctgcgccggccgggccggttcgacagggagatcgaggtcggagttccg
gacagggagggcagaatcgagatcctgcagatacatatgcacagcatgcccgtggcggat
gatgtgaacctggagggattagcggaccggatgcatggtttcgtcggggcagatgtgaac
gccctgtgcaaagaggcggccatgaaagccctgcgccgctatctgcccgatctcacctca
gaggatgagataccccaggagatcatcgatcagatgcaggtcatgggtgcggacttcgag
gaggctctcaaggagatcgagccctcggccatgagagaggttctggtggaggtgccccgg
gtcaactggaacgacatgggaggattgggagcactaaagcaggaattgatcgagtccata
gagtggcccatcaagcagccggagaagttccagaagatgggcataaggcccccaaaggga
attctgctctacggcccgccgggcacgggaaagaccatgatcgctcaggcggtggccaat
gagaccaacgccaacttcataagcatccgggggccgcagatgctctccaaatgggtgggc
gagtcggagaaggcgatcagagagatattccgcaaggcaaggcaagtctcgccggcaatc
atattcttcgatgagctggactccattgcccctatgaggggaatggacgaggggggcaga
gtgatggagagggtggtaaaccagcttctagcagagcttgacggcctggaagccttgaag
gatgtggtggtgatcgccgccaccaaccggccggatatactcgatccagcgctgcttaga
tcgggaaggttcgaccgaatgctcctggtggggccgcctgaccggcaggggaggcatgag
atcctcaagatccacgcctccaggacgcccaaaggagaggatgtgagcctggaggagctg
gcggaattgaccgatggctatgtgggctcagatctggacaacctctgccgggaggcggcc
atgcttgctctgcgggaagggctggaccgggtggagatgagacactaccgggaggctttg
aagaaggtgaggccgagcgtggaggagcatatgctcagttactatgagcgcatcggcgag
aggtttaagggcggaatcaaggttgagccggcttcgctcgctggctaccggtag
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