Methanothrix soehngenii: MCON_2082
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Entry
MCON_2082 CDS
T01468
Name
(GenBank) Uncharacterized protein family (UPF0027)
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mcj
Methanothrix soehngenii
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcj03016
]
MCON_2082
Enzymes [BR:
mcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MCON_2082
Transfer RNA biogenesis [BR:
mcj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MCON_2082
Prokaryotic type
tRNA splicing ligases
MCON_2082
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEB68628
UniProt:
F4BX72
LinkDB
All DBs
Position
complement(1773747..1775171)
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AA seq
474 aa
AA seq
DB search
MEIEKIDDNIYEVPIGYRPGMRVPGRIFVSAALREMVEPGTVDQVANVATLPGIVGHSMA
MPDAHLGYGFPIGGVAAFKEQGGIISPGGVGFDINCGVRLLRSDLQARDVQPLINTLLDA
LFQAVPSGLGSTGRLHATDRQLTESFLRGAEWAVEEGYGVESDLDFCEENGSMPGADPSQ
VGVKARKRGRPQLGTLGSGNHFLEIQRVEEIYNPEIAKRFGLFKGQITVMIHCGSRGAGH
QICTDHLDVLSKAVRKYNIDIPDKQLACAPLGTPEADHYFGAMVCAANYAWANRHIIAHW
TREVFDRYFPGSQLQLLYDVAHNVAKIEEHRVEGKKERLYVHRKGATRAFGPSRTEIPAA
YEGLGQPVLIPGSMGTASYVLCGQDKALDLTFGSACHGSGRVMSRSQALRQFTGKEVKAA
LNRDGIAVRSTSPGMLAEEAPQVYKPSGDVVDVVHNLGIATRVARLVPLGVSKG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgagaagatcgatgataacatctacgaggtgccaatcggctaccggccggga
atgcgggtgccgggcaggatattcgtctcagccgccctgcgggagatggtcgagccgggg
acggtcgaccaggtggccaatgtcgccacccttcccggaatcgtcggacactccatggcc
atgcccgatgcccacctgggctacggctttcccatcggcggggtggccgccttcaaagag
cagggtgggatcatcagtcccggcggggtgggctttgacatcaactgcggggtgcgcctg
ctccgctcggacctgcaggccagggacgtgcagccgctcatcaacaccctcctcgatgcc
ctctttcaggcggtgccctcgggcctgggatccacaggcaggcttcatgccaccgatcgg
caattgaccgaatcctttctccggggagcggagtgggcagtagaggagggctatggagtg
gagtcggacctggatttctgcgaggagaatggctccatgcccggagcggacccctcccag
gtgggggtcaaagcgagaaaacggggccgcccccagcttggtaccctgggcagcggcaac
cacttcctggagattcagagggtcgaggagatctataacccggagattgcaaaaaggttc
ggccttttcaagggccagatcacagtgatgatccactgcggctcacggggggcgggccac
cagatctgcaccgatcacctggacgtcctgtccaaagcggtgagaaagtacaatatcgac
atccctgataagcagctggcctgcgctcctctgggcactcccgaggcagatcactacttc
ggggccatggtctgcgccgccaactatgcctgggccaaccggcatatcatcgcccactgg
acgagggaggtcttcgaccgctacttccccggctcccagctgcagctgctctacgatgtg
gcccataacgtggccaagatcgaggagcatcgggtggagggcaagaaggagaggctctat
gtccaccgcaagggggccactcgggccttcggtccctcaagaacggagattcccgctgct
tatgagggcctgggccagccggtgctgataccggggagcatgggcacggcctcatacgtt
ctctgcggccaggacaaggcccttgatctgaccttcggctccgcctgccacggctcaggc
cgggtgatgagcagaagccaggccctgaggcagttcacaggcaaagaggtgaaggccgcc
ctcaaccgggacggaatcgccgttcgctccacctcccctggaatgctggcagaggaagct
ccccaggtctacaaaccctctggcgatgtggtggatgtggtgcacaacctgggcatagcc
accagggtagccaggctggttcccctgggggtctcaaaaggatag
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