Methanothrix soehngenii: MCON_3128
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Entry
MCON_3128 CDS
T01468
Name
(GenBank) conserved hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
mcj
Methanothrix soehngenii
Pathway
mcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCON_3128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcj03019
]
MCON_3128
Messenger RNA biogenesis [BR:
mcj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MCON_3128
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MCON_3128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Auto_anti-p27
Zn_ribbon_NOB1
HypA
HVO_2753_ZBP
Trm112p
ECR1_N_2
zf-C3HC4
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AEB69426
UniProt:
F4BTP1
LinkDB
All DBs
Position
complement(2637951..2638511)
Genome browser
AA seq
186 aa
AA seq
DB search
MMEDSFVLPGDTVGSLEEFVPGDYTYAREGMIFATTAGLVKVDPKTRSASVIPKTNAPVK
LNHGDIVVGEVIDLKDSLVIVSLAFKKGYEDRPISDEEATIHISNVKNSYVKDLRSLFSM
RDILKAKIVDERQMRLSTGDEDLGVIKAYCNRCLTGLMRKEGKLICPNCGNNETRKMSSA
YGLGVV
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagatagctttgtgcttcccggcgatacggtgggatctttggaggagttcgtt
cctggagactacacctatgccagggaaggaatgatatttgccaccactgccggcctggtt
aaggtcgatcccaagaccaggtctgccagtgtcatacccaagaccaacgccccagtcaag
cttaaccacggcgatatagtagtgggcgaggtaatcgatctcaaagacagcctggtgata
gtatccctggccttcaagaaaggctacgaggaccggccaatctcagatgaggaggccacc
attcacatatccaatgtgaagaactcttatgtcaaggatctgcgctcgctcttttccatg
cgcgacatcctcaaggcaaagatcgtcgatgagcggcagatgaggctctcgactggagac
gaggatctgggagtgataaaggcttactgcaaccgctgtcttaccggcttgatgcgaaag
gagggaaagctcatctgccccaattgcggcaacaacgagacgcgaaagatgagctccgcc
tatgggctgggggtagtgtag
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integrated database retrieval system
