Methanothrix soehngenii: MCON_3154
Help
Entry
MCON_3154 CDS
T01468
Name
(GenBank) exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mcj
Methanothrix soehngenii
Pathway
mcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCON_3154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcj03019
]
MCON_3154
Messenger RNA biogenesis [BR:
mcj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MCON_3154
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MCON_3154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AEB69448
UniProt:
F4BTR3
LinkDB
All DBs
Position
2658118..2658894
Genome browser
AA seq
258 aa
AA seq
DB search
MSSVISEIKKDFIYNLLIKGERIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVG
VKMQPGEPFQDSPNRGVIITNAELVPLASPSFEPGPPNEVGIELARLVDRGVRESKAVDL
EALCIEPGKKVWIVFIDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGEDYILPIR
DIPIATTAIEFSDVLMFDPGVEEEAIANTKLTVITTTNGDICGMQKSGTGMLNPEQVYRI
IDIACEKAKEIREKFLEA
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagcgtcatctccgagatcaagaaggatttcatatacaatctccttatcaagggg
gagaggatcgatggcaggaaattcgatcaataccgggagatctctattgagagggatgtc
attcgcaaggctgagggaagcgctctggtgaagctgggatccagccaggtcctggtagga
gtgaagatgcagcccggagagcccttccaggattctcccaaccggggagtcataatcacc
aatgcagagcttgtgcccctggcctcgccctctttcgagcctgggccgcccaatgaggtg
ggaatcgagctggcccggttggtggatcggggggtgcgcgaatcgaaggcggtggacctt
gaagctctctgcatcgagccgggaaagaaggtctggatagtgttcatcgatgtgcatatt
ctggatgactgcggaaacattctcgatgcagcctcgctgggggcaatatctgccctttta
tgcaccaaggtacctgcatccaggtttggcctgggcgaggattatatcctgcccataagg
gacattcccatagccacgaccgcgattgaattttccgatgtgctgatgttcgatcccgga
gtggaagaggaggcgatagccaacaccaagctcacagtcatcaccaccacaaacggagat
atctgcggaatgcagaagagcggcacaggaatgctgaatccagagcaggtctaccgcatc
attgatatagcatgtgagaaggcgaaagaaatccgggaaaagtttctggaagcttaa
DBGET
integrated database retrieval system
