Methanothrix soehngenii: MCON_3484
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Entry
MCON_3484 CDS
T01468
Name
(GenBank) conserved domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mcj
Methanothrix soehngenii
Pathway
mcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCON_3484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcj03019
]
MCON_3484
03400 DNA repair and recombination proteins [BR:
mcj03400
]
MCON_3484
Enzymes [BR:
mcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCON_3484
Messenger RNA biogenesis [BR:
mcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCON_3484
DNA repair and recombination proteins [BR:
mcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MCON_3484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AEB69707
UniProt:
F4BW97
LinkDB
All DBs
Position
complement(2933529..2937458)
Genome browser
AA seq
1309 aa
AA seq
DB search
MSDKDSLLWVLAYQLSGCTILGRTESEPLGSLPIQIRTAVLEVAHEIDPEDVLVKINKRQ
LIRVVDPRHANYKWVEQWRFANNEKRKILRSNHSNQKIPFKSVDEFIHVHNLDKPEDDSF
DEHYAERLFLKDAFLPVFGVHGLSFLSPQFAFRDQSGRERRVDFVFHGVRKYAFEVEGSK
YHDSAIINRDRFRDEKKRQRSLSDQGFIYKPFALDEIKGEDTREYLRKMALEDPILKGLL
ELELSDKEHSQKPTLIYIMDLLNHFPKKYPLYQKIALTILCKAIHQGKNKIVIADWSPML
ALLSVALLDTVALIERVARLYGLEVELPKVDIHIVGPYDKYGVYEVLRKYLGAEPGQGDQ
RVDFSMTPVNLYFNDNLPDADYVFADEAMNPCKSKDCISGASLERFPDMFLEIANRQIQL
ELPKMIDREILDYFARRYFLVPELKERQFELLVKILNQESVLGILPTSYGKSLVFQLYAL
LIPRTTLVICPLRSLIRDQIQNLQRQGLLCAESITSYDNRSGKDKKYEDLQGHNYRLLYI
SPERLREKEFYCQIKSTLENSPVGAIVVDEAHCVSEWGHDFRPSYLQIDRFRKTIEKATR
RMVPIIALTATASKDVKEDIRRVLNLPEEAVIQKESSDRTNLSLSVWKVGSSSTAKSNML
KHIITEKIPRALNMPFEELVPVNGKPPYDNAGIIFGIYAAPSGYNTAPEGVHFISQKLVK
NLLKDNRLINVYASEPPRLCSSCDSPRLVDASDDDLVRAGIISKKGLWPTEDHLKCEDCD
MVLPKREARKDANWEKKILQCQEEFHQSQFPLLVATKGFGMGIDKRNIRFIVHHSFASGL
EGYYQEAGRAGRDGDHAHVALMYVPPDQQCENDWLKDKSPPKPPCASGRWRCAYNLQSLC
DYGKQARFIEQSYIGIERDLKTVMKVYRSLEQGENIRSRKGENRSSRSKVKSEEEDEYKF
MELALYRLQQLGLVEGYSMRYLSWNETVFDPEYKDDWKPGDVISNLIEILNRTEAGKKFD
DEARGLQNISLIGENRNVRGENFITEAVRILLKLVYDTVPNMRYQMLTDEKNYAVSKQCR
RITLRSIFDTEQNHSRLVDSNYHCNFCDVCVPDLRFPRSEAEIPVYEAELDEIAKSIHLI
LERFDVEAMKKAVRTVFEKKADTSLLVQMTYQLEQKYNDPGTLFMAGTLSRHRGEQKEAL
RYLRDGFKFGVQREFKTDSLLAFYQEASAIDAKEAFSWIAEAKGPWDSTDGLEFLAEEAF
QCFGKRSQEYRHTFALWKLRKYGEISMNLGNILQKVDSLRMLKETAWPA
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgataaagattccctgctttgggttctagcatatcaattatctggatgcaccata
ttaggcagaactgaatcagaacccttaggaagcttgccaattcaaattagaaccgcagtt
ctagaggtcgcacatgagatcgacccggaagatgtcttagtaaaaattaataaaagacaa
cttataagagtggtagatccaaggcatgcaaattataaatgggtcgaacagtggcgtttc
gcgaataatgaaaaaaggaaaatccttcgtagcaatcatagcaatcaaaaaattcctttt
aaatccgttgatgagttcattcatgtgcataacctcgataagccagaagacgatagcttt
gatgaacattatgcagagcgcctcttccttaaggatgcgttcttgcctgttttcggtgta
cacgggctgtcatttttaagtcctcagtttgcattccgtgaccaatcgggtagagaacgc
cgagttgattttgtttttcatggagtaagaaagtacgcctttgaggtagaagggtccaaa
tatcatgattcagcaataataaacagagatcgattcagggatgaaaagaaaaggcaaaga
agcctatcggatcaaggctttatttataaaccgtttgctttggacgagattaagggtgag
gacactagagaatatctaagaaagatggcattagaagatccgattctaaagggcctacta
gaactcgaattgagtgataaagagcacagccaaaagcctacgctaatttatattatggat
ctcttaaatcattttccaaagaagtatcccttgtaccaaaaaattgcgctcaccatactc
tgcaaggcgatacatcagggcaagaacaagattgtgatagcagactggtcaccgatgttg
gccttgttgtctgtagccctgttagataccgtagctctgattgaaagggtagcacggcta
tacggtctagaggttgaactgccaaaggtggatattcatattgtgggtccgtacgacaaa
tatggagtttacgaggttttgagaaaatacctaggcgcagagcctggtcaaggggaccaa
cgagtcgacttttctatgactccggtaaatctttactttaacgacaatttaccagacgca
gactacgtttttgctgatgaggcgatgaatccctgcaaatctaaggattgtatatctgga
gcatcgttggagagatttcctgatatgttcttagagatcgcaaataggcagattcaactt
gaattgcccaagatgattgaccgagagatacttgattattttgcaaggcgttacttctta
gttcccgagcttaaagaacggcagtttgagctcttagtaaagattctgaatcaagaatca
gtattaggtatccttcctacaagctacggcaaatcacttgtctttcagttatacgcgtta
ttaatcccaagaaccacacttgtcatttgccctctccgttcgcttattcgagatcaaatc
caaaacttgcaacgccagggattactttgcgccgaatccatcacatcctacgacaatcgt
tccggaaaagataagaaatacgaagatcttcaaggccataattaccgtctgctctatatt
tctccagaacgtcttcgagaaaaagaattctattgccagatcaaatctactctggaaaat
agtccggtaggagcaattgtggttgatgaggcccattgcgtatctgaatggggtcatgat
ttccgtccttcctatcttcagatcgatcgcttccgaaagactatcgagaaagccaccagg
cgtatggttccaattatagcacttacggcaactgcctcaaaagatgtaaaagaagacatc
agaagggttttgaacttgcctgaggaagccgttattcagaaagagagcagtgataggacc
aacctcagcctttccgtatggaaagtaggttctagcagcactgccaagtcgaacatgctt
aagcatatcattactgaaaaaattcccagagctttgaacatgcccttcgaggagctagtg
ccggttaacgggaaacctccttatgataatgccggcattatttttggcatctatgcagcg
ccgtctgggtataatacagcgccggaaggagttcacttcatttcccaaaaacttgtaaaa
aatttgcttaaggacaatcgattgattaatgtatatgcctctgagccaccaaggctttgt
tcatcctgcgattctcctcgtttagttgatgcaagcgatgatgatctcgtgcgggcgggt
attataagtaaaaagggcctatggcccactgaggatcatcttaaatgcgaagactgtgat
atggtccttccgaagcgtgaagcgcggaaggatgcaaattgggaaaagaaaatcctgcaa
tgtcaggaggagtttcatcaatctcaatttccgctattagttgccacaaaaggctttggc
atgggcattgataagcgcaatatcaggtttatcgtgcaccactccttcgcaagcggtttg
gaggggtattatcaggaagcaggacgcgcaggacgagatggcgatcatgcccacgttgct
ctcatgtatgtacctccggaccagcagtgcgaaaatgattggctaaaggataagagcccg
cctaagccaccttgtgcttctggtaggtggagatgtgcctacaacttacaatctttgtgc
gactacggaaaacaggcacgcttcattgagcaatcgtatataggcatagagagagatcta
aaaactgtcatgaaggtttatcggagtttagaacaaggagagaatattcgctcaagaaaa
ggtgaaaacagatcttcaagaagcaaggtcaaaagcgaagaggaagacgaatataaattt
atggagttggccttatacaggctgcaacaattgggtctggttgaaggctattctatgcgc
tatctaagctggaatgagactgttttcgatcccgaatacaaagatgactggaaaccagga
gatgttatatctaatctaatagaaatattgaaccgcactgaagcagggaaaaaattcgat
gatgaagccagaggactccaaaatatctccttgattggagaaaatcgcaatgtaagagga
gagaatttcataactgaggcagttaggatattattgaaacttgtctatgatacagtgccg
aatatgcgctaccaaatgctcacagatgagaagaattatgcagtgagcaaacaatgccgc
cgtataacattacgtagtatttttgatactgaacaaaatcattctcgtctggtcgattca
aattaccattgcaatttctgtgatgtctgcgttcctgacctgagatttccgaggtcagaa
gctgagattccagtttatgaagcagaattagacgagatcgcaaagagtatccatctcatt
ctagagagatttgatgtagaagccatgaaaaaagctgtgcgaactgttttcgaaaaaaag
gcagatacaagccttcttgtccaaatgacctatcagctagagcagaaatacaatgatcct
ggaactttgtttatggctggaacccttagcaggcatcgtggagagcaaaaagaagcattg
cgttatctaagggatggattcaaatttggtgtacaacgagaatttaagacggattctctt
ttggccttttaccaagaggctagcgctatagatgccaaagaagctttctcctggattgct
gaagctaaaggtccttgggattcaaccgatggattggagttcttggcagaagaggcattc
cagtgcttcggcaagagatcccaggaataccgtcacacttttgctctttggaagttacga
aaatatggagagatctctatgaatctgggaaatattttgcagaaagttgatagtcttagg
atgttgaaggagactgcatggcccgcatag
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integrated database retrieval system
