Mycoplasmopsis canis PG 14: AXW82_01610
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Entry
AXW82_01610 CDS
T04557
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mck
Mycoplasmopsis canis PG 14
Pathway
mck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXW82_01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mck03019
]
AXW82_01610
03016 Transfer RNA biogenesis [BR:
mck03016
]
AXW82_01610
Enzymes [BR:
mck01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AXW82_01610
Messenger RNA biogenesis [BR:
mck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXW82_01610
Transfer RNA biogenesis [BR:
mck03016
]
Prokaryotic type
tRNA degradation factors
AXW82_01610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
Yop-YscD_cpl
Motif
Other DBs
NCBI-ProteinID:
AMD81243
LinkDB
All DBs
Position
complement(426736..428952)
Genome browser
AA seq
738 aa
AA seq
DB search
MDAKKVINFISQAKSRTFLEIAKHFRISPSNNRELTSLLSVLQKDYKVFKNSKDEYYTVD
LIGTIEGVLSVSAKGSFGFVDYDIDLENNTKKSAYIKNFNFNGALHSDLVKVNLYQNTKI
EGSSIDGVVTEIVQRNNEEIQGFIKQKNSINYFVPVDARFQSLTWTITSSKIQPKLNDLV
VAKIIKYDQKNIFIELDRVITNEADPMVYVKYYLENIKAPSNFPSSMDEEISAIPKNIEF
EDKTKRVDLTKKMIVTIDGDDTKDFDDAIYVEKLDNGNFLLGVYIADVSYYVKEGTAIDE
EALKRGTSIYLVDRVIPMLPVELSNGICSLNPNEKRFVIACEMEIDKFGKNVNVNIFEGI
IESRFRLTYKQVDKYFNEGDISLDVTRQDVQELTQMLDKAKELSLILHDYKVKEGYVDFE
ITEPKIKLDENGSVKEIIINQRGFSEVLIEDFMVRANETVAKFLFDKKFPALYRVHELPD
EMKISNLKNSLSAVGIKNVSLKANTITPLKFASFVNEIKKTRDDDFIKLMFLRTMQKAVY
SNNNIGHFGLASEFYCHFTSPIRRYPDLVIHRTIRELVFNKNYNLIDKFTENMAVYGDLN
TKSEQKAVQIERNVNDLKFAEYLKNNVGKTYKAQILSILPFGFFVEFDFKASGLVHKSTL
VDGTYEANELLTKLSSEKRTFTIGDYVNVVILNTDLVEGKVDCVLEDLYEEFINNKKKNL
EVKKQEKNNKKQKNYVKK
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgaaaaaagtaataaattttattagccaagcaaaatcaagaacttttttagaa
attgctaaacattttaggatttctccttcaaataatagagaattaacttcactgctttca
gttcttcaaaaggattacaaggttttcaagaattctaaggatgaatattatactgttgat
ttaattgggacaattgaaggtgttttatcggtatcagcaaaaggaagttttggttttgtt
gattatgatattgatttagaaaataatacaaaaaaaagtgcttatataaaaaattttaat
tttaatggagctttacacagtgatttagttaaggttaacttatatcaaaatacaaaaatt
gaaggaagttctatagatggtgtagtaaccgaaattgttcaaagaaataatgaagaaatt
caaggatttataaaacaaaaaaattctataaattactttgttccagttgatgctagattc
cagagtttgacatgaacaataacatctagtaaaattcaacctaaattaaatgatttagtt
gttgctaagattatcaaatatgatcaaaaaaatatttttatagaattagatagggtaata
actaacgaagcagatcctatggtttatgtaaaatattatcttgaaaatataaaagcgcca
agcaattttccttcttcgatggatgaagagatttcggcaatacctaaaaatattgaattt
gaagataaaacaaaaagagtagatttgactaaaaaaatgattgtcactattgatggcgat
gatacaaaggattttgacgatgcgatttatgtcgaaaaattagataacggaaattttctt
ttaggtgtttatatagctgatgtttcttattatgttaaagaaggaactgcaattgatgag
gaagctcttaaaagagggacaagcatctatttagttgatagagtaatacctatgttgcca
gttgaactttctaatggtatttgttctttgaatccaaacgagaaaagatttgtaattgct
tgtgaaatggaaatcgataagtttggaaaaaatgtcaatgtaaacatttttgaaggaatt
atagaaagtagatttaggttgacttataaacaagttgataagtatttcaatgaaggtgat
atttcgttagatgtcactagacaagacgttcaagaattaactcaaatgttggataaagct
aaagagttaagtttaatacttcatgattacaaagtcaaagaaggatatgtcgactttgaa
ataacagaacctaaaatcaaattagatgagaatggttctgtaaaagaaataatcataaat
caaagaggcttttctgaagtattaatagaagactttatggttagagctaatgaaacggtt
gcaaaatttttatttgataagaaatttccagcattatatagagttcatgagttacctgat
gaaatgaaaattagtaatttaaaaaactcactaagtgcagttggcataaaaaatgtatca
ctaaaagcaaacacgataactccattaaaatttgcttcctttgtaaatgaaataaagaaa
acaagagatgatgattttattaaattaatgtttttaagaacaatgcaaaaagctgtatat
tcaaataataacatcggtcactttggtttagcatctgaattttattgtcattttacaagc
ccgataagaaggtatccagatttagtgatacacagaacaattagggaattagtatttaac
aagaattataatttaattgataagttcaccgaaaatatggcggtatatggtgatttgaat
acaaagtcagaacaaaaagccgtgcaaatcgaaagaaatgttaatgatcttaagtttgct
gaatatttaaaaaacaatgttggtaaaacttataaagcgcaaattttaagtattttacca
tttggtttctttgttgagtttgattttaaagctagtggattagtgcacaaaagcacttta
gtagacggaacttatgaagctaacgaattattaactaaattatctagcgaaaaaagaaca
ttcacaatcggagattatgttaatgttgttattcttaacacagatttagtagagggaaaa
gtagattgtgtccttgaagatttatatgaagagttcattaataataaaaagaaaaattta
gaagttaaaaaacaagaaaaaaataacaagaagcaaaaaaactatgttaaaaagtaa
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