Macrococcoides caseolyticum: MCCL_1133
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Entry
MCCL_1133 CDS
T00848
Name
(GenBank) conserved hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mcl
Macrococcoides caseolyticum
Pathway
mcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCCL_1133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcl03019
]
MCCL_1133
03400 DNA repair and recombination proteins [BR:
mcl03400
]
MCCL_1133
Enzymes [BR:
mcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCCL_1133
Messenger RNA biogenesis [BR:
mcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCCL_1133
DNA repair and recombination proteins [BR:
mcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MCCL_1133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DpnI_C
Motif
Other DBs
NCBI-ProteinID:
BAH17840
UniProt:
B9E6M2
LinkDB
All DBs
Position
complement(1241247..1242629)
Genome browser
AA seq
460 aa
AA seq
DB search
MSIEHLLIKRFGIRKLNEEQRIIIDSILNNEDVLALMPTGSGKSITFQLPVVFTEGRALV
ITPLIALMEDQVMQLKMSKINAVAIHGGLSRAELSIITHRIDSYQFIYCSPEWLQSELAE
ALFSRIKFTHVVLDEAHCIAQWGFQFRPHYLLVNEVIDRHNAQVIALTATATKKIIHDIE
EIIGRSLKVHDFLKNKDNMYLYKYEVHEDDKLKFLQKVLRESGPSIIYFSSKKVCDAIYQ
ALSENFIVDRYHADMTYSERTEVQSRFMEDEVQIICATSAFGMGINKKNIRTVIHYHIPA
SILQFIQEIGRAGRDHHSCQSILLYNNHDIAQASRLLKLDAIDTVDLHNYALQNIYDAEK
KEKLDIFHRKFANNVIADKIKAHQYEQQRLLSKMLAYAHSINCLHHELSGMLKASSNNSD
ESYGRNHCHKCKVTDLQRYENITKSIQLEPVSLILERLFL
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtccattgaacatttgttaattaagcgttttgggattagaaagttaaatgaggaacaa
aggataataattgatagtatattaaataatgaagatgtattagcactgatgcctactgga
agtggtaaatcaatcacatttcagctgccagttgtatttactgaaggaagagcactcgtt
attaccccattaatcgctttgatggaggaccaggtgatgcagctgaagatgagtaaaatt
aatgctgtagctattcatggagggctgtcacgtgcagaactttcgataattacgcatcga
attgatagctatcaatttatttattgttctcctgaatggttacaaagtgaacttgcagaa
gcattattctctcgtataaagtttacgcatgttgtactggacgaagcacattgcattgcc
caatggggattccaatttcgccctcattacttacttgtgaatgaagtgatcgatagacat
aatgcacaggtaatcgctctaacagctacagcaacaaaaaagattattcatgatatcgaa
gagattattggaaggtcattgaaagtacatgactttctcaaaaataaggacaatatgtac
ttgtataagtatgaagtacatgaagatgataagcttaaatttctgcaaaaagtacttaga
gagagtgggccttctattatctatttctcatcaaagaaggtatgcgatgccatataccaa
gcgctttctgaaaattttattgtggatagatatcatgcagatatgacctatagtgaacga
actgaagtacagagtcgatttatggaagacgaagtacagataatttgtgcaaccagtgct
tttggaatgggaatcaacaagaagaacatccgtacggtgattcactatcatatcccggca
tcaatccttcagtttattcaggaaattggtcgtgcgggaagagatcatcactcttgtcaa
tcgatactcctatataacaatcatgatattgcacaagcatcaagactgctcaaattagat
gctattgacacagttgatctgcacaattatgctctgcaaaatatttatgatgcagaaaag
aaagaaaagcttgatatttttcatcgtaaatttgctaacaacgttattgctgataaaata
aaggcgcaccaatatgagcaacagcggttattatcaaagatgcttgcgtatgcgcatagc
attaattgcctacaccatgaactttctgggatgttgaaggcatcttcgaataattcagat
gaatcttacggacgtaatcattgtcataagtgcaaagtgacagatttacaaagatatgaa
aatattacgaaaagtattcaactggagcctgtgtcattaattttagaaaggttattttta
tag
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