Macrococcoides caseolyticum: MCCL_1739
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Entry
MCCL_1739 CDS
T00848
Name
(GenBank) conserved hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcl
Macrococcoides caseolyticum
Pathway
mcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCCL_1739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcl03019
]
MCCL_1739
03009 Ribosome biogenesis [BR:
mcl03009
]
MCCL_1739
Enzymes [BR:
mcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCCL_1739
Messenger RNA biogenesis [BR:
mcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCCL_1739
Ribosome biogenesis [BR:
mcl03009
]
Prokaryotic type
rRNA helicases
MCCL_1739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
SUa-2TM
MTPAP-like_central
Motif
Other DBs
NCBI-ProteinID:
BAH18446
UniProt:
B9E8C8
LinkDB
All DBs
Position
complement(1877444..1878940)
Genome browser
AA seq
498 aa
AA seq
DB search
MQKFRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPL
IEKVKGREGIQSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKKKP
QIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQTML
FSATMPKAIQELVQKFMKNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTNFLDVHRP
ELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKAKN
RQMQALRPPTPGEVMKAREQDVKSKVKAWVEADTEARIESIAKELIEEYGDVKLVASLLQ
ELIQSNNDVDVQLTFEKPLGRKGGGKSFRSGRSGNRSGGGNRNRKDGKDNRRKAFDRGNK
APKAKKTFKGRTFADHKK
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttagagacctaggtatcagcgaacctaccataaatgcgctggagaaattg
ggatttacagaacctacaccgattcaaatggatagtatcccacatacgatggctggccgt
gacgtattaggccaagcgcaaactggtactggtaaaactggtgcattcggtataccttta
attgaaaaggttaaaggccgtgaagggatccaaagtttaatcctggctccaacacgtgag
ttagctgtacaggttgcagagcagttgaaggctttcagtcgtggacaagggatccaagtt
acaactgtattcggtggtatgccgattgaccgtcagattagagagcttaagaagaaacct
caaattgttgtaggtacaccaggtcgtgtaatcgaccatttaaatcgtcgcactttaaag
actgaagacatcaatactttaatcttagacgaagctgatgaaatgatgaacatgggattc
atcgatgatatgcgttttatcatggataaattaccgaaagaaaatcgtcagacgatgctt
ttctcagcaacaatgcctaaagcaattcaagaacttgttcaaaagttcatgaaaaaccca
gttatcgtaaagacgatgacaaacaacgattcagatccttcaatagaagagttctacaca
atcgttaaagaattagagaaatttgatacatttacaaacttcttagatgtacaccgacca
gaacttgcaatcgtatttgggcgtacaaagcgtcgtgtagacgaattgacaagtgcatta
atttctaaaggttaccgtgctgaaggattacacggtgacattactcaggcgaaacgtctt
gaagtattaaagaaatttaaaaatgaccaaattgatattcttgttgcaacagatgtagcg
gcacgtggattagatatctcaggtgtaacgcatgtttacaactttgatattccgcaggat
gttgaaagttatacacaccgtatcggacgtacaggccgtgcagggaaacatggtatggcg
atttcattcgttaatccagttgagatggattatattcgtcaaatcgaaaaagctaaaaac
cgtcaaatgcaggcattacgtccaccaacaccaggtgaggtcatgaaagcacgtgaacaa
gatgttaaatctaaagtaaaagcttgggttgaagcagatactgaagcgcgtatcgaatca
atcgcgaaagaattaatcgaagagtacggtgatgtaaaattagtagcatcattgttacaa
gagttaattcaatcaaacaacgatgttgatgttcaattaacattcgaaaaaccacttgga
cgtaaaggtggcggcaaatcattccgtagtggtcgctcaggtaaccgctcaggtggagga
aaccgtaaccgtaaagatggtaaggataaccgtcgtaaagcgttcgatcgtggaaataaa
gcacctaaagcgaaaaaaacgtttaaaggcagaactttcgcagatcataaaaaataa
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