Myroides sp. JBRI-B21084: P3875_00285
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Entry
P3875_00285 CDS
T09249
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mcla
Myroides sp. JBRI-B21084
Pathway
mcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3875_00285 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcla03021
]
P3875_00285 (rho)
03019 Messenger RNA biogenesis [BR:
mcla03019
]
P3875_00285 (rho)
Transcription machinery [BR:
mcla03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
P3875_00285 (rho)
Messenger RNA biogenesis [BR:
mcla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P3875_00285 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
AAA_22
Fan1_SAP
SAP
Cytochrom_B558a
AAA
CCC_C_1st_pro
Motif
Other DBs
NCBI-ProteinID:
WKW46553
LinkDB
All DBs
Position
52795..54435
Genome browser
AA seq
546 aa
AA seq
DB search
MFDKNVLKGMKLPEIKEIAKTIGIAKTNLKKEELIDAILKLQASFKEEEVTTTATETATP
QKKEKRKRIQTTADDVETEEVNTVPEPTTTQPTVDEVIEDTPTNSPKQTPNKQRKKATQA
TETQEQLPLETVAETEKESTEKIPAETEKQNTNQNQNRNKNQKKQNYRDPDYEFEGIIEC
EGVLEVPKDGGSHGYLRSSDYNYRKSPDDIYISQSQIRLFGLKKGDTIKGIVRPPKGNEQ
HFPLVRITKINGHEPDEVRDRPSFEHLTPLFPKEKFNLSGNNSRLSTRIIDLFAPIGKGQ
RGMIVAQPKTGKTMMLKEIANAIADNHPEVYQIVLLIDERPEEVTDMQRNVRAEVVASTF
DEEARYHVELADMVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGRVLSGGVDAN
ALQKPKRFFGAARNIENGGSLTIIATALTDTGSKMDDVIFEEFKGTGNMELQLDRKIANK
RIFPAVDLTSSSTRRDDLLQDRFTNSKMVVLRNILADMNPVEAITFIHDRIKNTKSNEEF
FDSMRD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaaaaatgtgttaaagggcatgaaattgcccgaaataaaagaaatagcaaaa
acaattggtatcgcaaaaaccaatcttaaaaaagaagaattgattgatgccattttaaag
ctacaagctagttttaaggaagaagaagtaactacaactgctaccgaaactgcaacgccc
caaaaaaaggaaaaacgaaaaagaatacaaactacagctgatgatgttgaaacagaagag
gttaatacagtacctgagccaacaacaacacagccaacagttgatgaggtaattgaggat
acaccaaccaattcacctaaacaaaccccaaataagcagcgtaaaaaagcaacccaagct
acagaaacgcaagaacaattacctttagaaacggttgcagaaactgaaaaagaatctaca
gaaaaaataccagctgaaaccgaaaagcaaaataccaatcaaaatcaaaacagaaataaa
aatcaaaaaaagcaaaattaccgtgatcctgattacgaatttgaaggtattattgaatgc
gagggtgttttagaagtgccaaaagatggtggttcacacggttatttacgctcgtctgat
tacaattaccgcaaatcgcctgatgatatttatatctcacaatcacaaatacgtttgttc
ggtttaaaaaaaggcgatactattaaaggaattgttcgaccacccaaagggaatgaacaa
cattttccattggttcgaattacaaaaattaacggtcatgaacccgatgaggtgcgcgat
cgcccttcatttgagcatttaacaccgttatttcctaaagaaaaattcaacttatcaggc
aataattctagactttcaacacgtattatcgatttatttgcacctattggtaaagggcaa
cgtggtatgattgtggcgcaacctaaaacgggtaaaactatgatgttgaaagagatagct
aatgctatagcagataatcatccggaagtttaccaaattgttttgttaattgatgaacgc
cctgaagaagtaacagatatgcaacgcaatgtacgggcagaagtagtagcgtcgaccttt
gacgaagaagcacgttaccacgttgaattagccgatatggtacttgaaaaagcaaaacgc
ttggtagaatgtggacatgatgtagttattttattagattcaattacgcgtttggcacgt
gcttataacacagttcagccagcttcgggtcgtgttttatcgggtggggtagatgctaat
gcgttgcaaaaaccaaaacgtttttttggtgctgcccgcaatatagaaaacggcggatcg
ctaacaattatagctacagcattaaccgatacgggttctaaaatggacgatgttattttt
gaagagtttaaaggtactggtaatatggaattgcagttagatcgtaaaattgcaaacaaa
cgtattttcccagctgttgatttaacttcctcttcaacacgccgcgacgatttgttgcaa
gatcgttttactaatagtaaaatggttgttttgcgcaatattttagcagatatgaaccca
gtagaagctattacttttattcatgaccgaattaaaaacacaaaatcaaacgaagagttt
tttgatagtatgcgtgattaa
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